PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00047861001 | ||||||||
Common Name | GSBRNA2T00047861001, LOC106371606 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 758aa MW: 83793.2 Da PI: 6.786 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.4 | 6.5e-24 | 164 | 265 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+++ L +gD v+F GSBRNA2T00047861001 164 FCKTLTASDTSTHGGFSVPRRAAEDCfapldyK-QQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKSLVSGDAVLFL- 251 99****************************963.3445679************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 +++++el+++++r+ GSBRNA2T00047861001 252 -RDENGELRLGIRRS 265 .5689999****986 PP | |||||||
2 | Auxin_resp | 125.5 | 3.4e-41 | 289 | 370 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+s+ks+F+v+Y+Pra++seFv+++ek+ +++k+++++G+Rf+m+fe++ds+err++G+v+gv d+dp+rWpnSkWr+L GSBRNA2T00047861001 289 VANAVSNKSMFHVFYSPRATHSEFVIPYEKYITSIKNPICIGTRFRMRFEMDDSPERRCAGVVTGVCDMDPYRWPNSKWRCL 370 689******************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.6E-40 | 155 | 276 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.05E-42 | 158 | 280 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.14E-21 | 162 | 264 | No hit | No description |
SMART | SM01019 | 3.7E-23 | 164 | 266 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.422 | 164 | 266 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.5E-22 | 164 | 265 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.3E-35 | 289 | 370 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 3.63E-10 | 633 | 711 | No hit | No description |
PROSITE profile | PS51745 | 22.181 | 636 | 718 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 758 aa Download sequence Send to blast |
MEFDLNTEFA EVEEEENDKG KRLGVSPSSS SSCSSGSSSS STTASASSIY SELWHACAGP 60 LTSLPKKGNV VVYFPQGHLE QGAMVSYSSP LDIPKLDLSP QIFCRVANVH LLANKETDEV 120 YTQVTLLPLQ ELSVLNGEGK EVRELGGDEE KNGSSSVKKT PHMFCKTLTA SDTSTHGGFS 180 VPRRAAEDCF APLDYKQQRP SQELIAKDLH GVEWKFRHIY RGQPRRHLLT TGWSIFVSQK 240 SLVSGDAVLF LRDENGELRL GIRRSARPRN GLPDSIIQKY SSSSILSLVA NAVSNKSMFH 300 VFYSPRATHS EFVIPYEKYI TSIKNPICIG TRFRMRFEMD DSPERRCAGV VTGVCDMDPY 360 RWPNSKWRCL LVRWDESFMS DHQERVSPWE IDPSGSLPPL SIQSSPRPKR PWAGLLGTTT 420 PQGNPITERG GFLDFEESVR PSKVLQGQEN IGSATSSSPL QGFDVMNRRI LDFAGMQQSH 480 ANPLLLSSRV KDRFGEFVDT TSLDLDRFPR VLQGQEICSL RSFPQIAGLS PGKASLGYNG 540 AFAYQANKTS FYPLASQGIR SSHIPYQSAG DKSLSHPSSR KFDAQGEDGG LPKIDMMGTE 600 KGREVNMNAS TTGCKLFGFS LPVGTPASNQ QSSSKRICTK VHKQGSLVGR AIDLSRLNGY 660 NDLLTELERL FNMEGLLRDP EKGWRILYTD SENDMMVVGD DPWHDFCSVV LKIHLYTKEE 720 VENGNDDNRS CLEQAALMME ASKSSSVSQP DSSPTGH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-113 | 32 | 396 | 2 | 357 | Auxin response factor 1 |
4ldy_B | 1e-113 | 32 | 396 | 2 | 357 | Auxin response factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00047861001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JN979464 | 0.0 | JN979464.1 Brassica rapa subsp. pekinensis auxin response factor 4 (ARF4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013667138.1 | 0.0 | auxin response factor 4 isoform X2 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | A0A078GYL7 | 0.0 | A0A078GYL7_BRANA; Auxin response factor | ||||
STRING | Bra002479.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9530 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 106371606 |