PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00047778001
Common NameGSBRNA2T00047778001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Nin-like
Protein Properties Length: 704aa    MW: 77845 Da    PI: 6.1803
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00047778001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK924.4e-29529579252
               RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                           k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++
  GSBRNA2T00047778001 529 DKTITLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKV 579
                          689**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.166516599IPR003035RWP-RK domain
PfamPF020421.5E-25531579IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MEDSFLQTQN AVMDTEFMDG LLLDGCWLET TDGSEFLNLP PFDPSSFMWS PPQDTSAICT  60
SGVVSQTYGQ DCADEFQYNK RWWIGPGGGG GSSVTERLVQ AVEHIKDYTT ERGSLIQLWV  120
PVNRGGKRVL TTKEQPFSHD PMCQRLANYR EISVNYHFSA EQDDSKALAG LPGRVFLGKL  180
PEWTPDVRFF KSEEYPRVQH AQDCDVRGTL AIPVFEQGSK ICLGVIEVVM TTEMVKLKPE  240
LESICRALQA VDLRSTELPV PPSLKGCDLS YKAALPEIRN LLRCACETHK LPLAQTWVSC  300
LQQSKSGCRH NDENYIHCVS TIDEACYLGD PTVREFQEAC SEHHLLKGQG VAGQAFLTNG  360
PCFSPDVANY KKSEYPLSHH ANMFGLHGAV AIRLRCIHTG DADFVLEFFL PKDCDNMGEQ  420
RKMLNALSTI MAHVPRSLRT VTDKELEEES EVVEREEVVT PKVENTPELH HSNPQNLGLV  480
FDGGDKLPND GFGLKRGYDY TRDANINESN TFTIGGFNSM AEKKRTKADK TITLDVLRQY  540
FAGSLKDAAK SIGVCPTTLK RICRQHGIQR WPSRKIKKVG HSLQKIQRVI DSVEGVSGPL  600
PIGSFYANFP NLEPSQQAKT SPPPPPPPPL QLSKSPVSQY SHSSSSSQCC SSETQLNSSA  660
TAHPSQGDTF RKVSSEVDLQ SSVLTLSSLE NIPQGVAVVI ISR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00047778001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892470.0AC189247.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB018K09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585973.10.0PREDICTED: protein NLP4 isoform X1
RefseqXP_013585974.10.0PREDICTED: protein NLP4 isoform X1
RefseqXP_013717638.10.0protein NLP4
RefseqXP_013717640.10.0protein NLP4
RefseqXP_022566261.10.0protein NLP4
SwissprotQ9LE380.0NLP4_ARATH; Protein NLP4
TrEMBLA0A078H1490.0A0A078H149_BRANA; BnaC05g16000D protein
STRINGBo5g030540.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34612663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.20.0Nin-like family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]