PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00047582001

Common Name

GSBRNA2T00047582001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 896aa MW: 99318.9 Da PI: 4.7219

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00047582001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88	7.8e-28	609	659	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i l++l++yF++++kdAAk++gvc+T+LKriCR++GI RWP+Rkik++ GSBRNA2T00047582001 609 EKTIGLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRHHGITRWPSRKIKKV 659 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.836	598	679	IPR003035	RWP-RK domain
Pfam	PF02042	6.6E-24	612	659	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.29E-24	787	882	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.5E-23	795	878	No hit	No description
PROSITE profile	PS51745	26.065	797	880	IPR000270	PB1 domain
SMART	SM00666	3.0E-26	797	880	IPR000270	PB1 domain
CDD	cd06407	5.08E-43	798	879	No hit	No description
Pfam	PF00564	4.9E-16	798	879	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 896 aa Download sequence Send to blast
MEDDGGSDGG EGNGGFSPNS SFGAFPETAM DLDFMDELLF DGCWLETTDS KSLKETEEAA 60 SDSTAMNANS SFLCFGENPS QDNFSNEETE RMNQEGFDQA EKFLLDEAEV GRSWWIAPRT 120 REDPCSSVKE RLLRAISGLE EAVPDKDFLV QIWVPFQQEG KNFLTTLAQP HLFNQKYSSL 180 AKYRHVSETY NFPADEGSTE GGLPGRVFLQ KFPEWTPDVR FFRSDEYPRI KEAQKCDVRG 240 SLALPVFERC SGTCLGVVEV VTTTQKMNYR PELENICKAL EAVDLRSSSN LKPPNNESLQ 300 VYNDFYYAAL PEISDFLASV CRRYDLPLAL SWAPCAQQGK GGSRHSDENF SQCVSTIDSA 360 CFVLDEESKY FLEACSEHHL LQGEGIVGKA FKATKLCFVP EVTTFSKTNY PLAHHAKISG 420 LHAALAVPLK SKCNGLVEFV LEFFFPKGCL DTEAKQEMLK SLSATLQQDF RSSNLVIDKD 480 LELEVVLPVR EDMVLSENPL TGAETAEALR EIHLLQESSW ISHMIKANEK GKDVSLSWEY 540 QNEDPKDEFK LSPGWDNSQL DPAPNNIPSE AEQFQQGSTP GLRVDAGPST ESASTGGRRP 600 GEKRRTKTEK TIGLDVLRQY FAGSLKDAAK SIGVCPTTLK RICRHHGITR WPSRKIKKVG 660 HSLKKLQLVM DSVQGAQGSI PLDSFYTSFP ELSSPNISSN GSSLKNNEQL HHYNVPIENG 720 GPGEDKPAPR SPSSSCSGSN TNTPNADGVV KEAHSEAELQ NGNQEETKCL ARTQSHNIFK 780 EPPLPGSSKM SFRDGGGIKV KATFGEAIIR FTLLPSWGYT ELQQEITRRF NIVDVSWFDL 840 KYLDDDEEWV LLTCEADLEE CIDIYRSSQS QTIKISLHDP FQVKLGGSFG SSGPS*

Sequence ? help Back to Top

Protein Sequence Length: 896 aa Download sequence Send to blast

MEDDGGSDGG EGNGGFSPNS SFGAFPETAM DLDFMDELLF DGCWLETTDS KSLKETEEAA  60
SDSTAMNANS SFLCFGENPS QDNFSNEETE RMNQEGFDQA EKFLLDEAEV GRSWWIAPRT  120
REDPCSSVKE RLLRAISGLE EAVPDKDFLV QIWVPFQQEG KNFLTTLAQP HLFNQKYSSL  180
AKYRHVSETY NFPADEGSTE GGLPGRVFLQ KFPEWTPDVR FFRSDEYPRI KEAQKCDVRG  240
SLALPVFERC SGTCLGVVEV VTTTQKMNYR PELENICKAL EAVDLRSSSN LKPPNNESLQ  300
VYNDFYYAAL PEISDFLASV CRRYDLPLAL SWAPCAQQGK GGSRHSDENF SQCVSTIDSA  360
CFVLDEESKY FLEACSEHHL LQGEGIVGKA FKATKLCFVP EVTTFSKTNY PLAHHAKISG  420
LHAALAVPLK SKCNGLVEFV LEFFFPKGCL DTEAKQEMLK SLSATLQQDF RSSNLVIDKD  480
LELEVVLPVR EDMVLSENPL TGAETAEALR EIHLLQESSW ISHMIKANEK GKDVSLSWEY  540
QNEDPKDEFK LSPGWDNSQL DPAPNNIPSE AEQFQQGSTP GLRVDAGPST ESASTGGRRP  600
GEKRRTKTEK TIGLDVLRQY FAGSLKDAAK SIGVCPTTLK RICRHHGITR WPSRKIKKVG  660
HSLKKLQLVM DSVQGAQGSI PLDSFYTSFP ELSSPNISSN GSSLKNNEQL HHYNVPIENG  720
GPGEDKPAPR SPSSSCSGSN TNTPNADGVV KEAHSEAELQ NGNQEETKCL ARTQSHNIFK  780
EPPLPGSSKM SFRDGGGIKV KATFGEAIIR FTLLPSWGYT ELQQEITRRF NIVDVSWFDL  840
KYLDDDEEWV LLTCEADLEE CIDIYRSSQS QTIKISLHDP FQVKLGGSFG SSGPS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.21238	0.0	root

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00047582001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009121154.1	0.0	PREDICTED: protein NLP1 isoform X1
Refseq	XP_009121155.1	0.0	PREDICTED: protein NLP1 isoform X1
Refseq	XP_009121156.1	0.0	PREDICTED: protein NLP1 isoform X1
Refseq	XP_013666605.1	0.0	protein NLP1-like isoform X1
Refseq	XP_013666606.1	0.0	protein NLP1-like isoform X1
Refseq	XP_013666607.1	0.0	protein NLP1-like isoform X1
Swissprot	Q8H111	0.0	NLP1_ARATH; Protein NLP1
TrEMBL	A0A078H3G7	0.0	A0A078H3G7_BRANA; BnaA07g03130D protein
TrEMBL	A0A3P6BIG6	0.0	A0A3P6BIG6_BRACM; Uncharacterized protein
STRING	Bra002025.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	0.0	Nin-like family protein

Publications ? help Back to Top
Suzuki W,Konishi M,Yanagisawa S The evolutionary events necessary for the emergence of symbiotic nitrogen fixation in legumes may involve a loss of nitrate responsiveness of the NIN transcription factor. Plant Signal Behav, 2014. [PMID:24270631] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]