PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00047285001 | ||||||||
Common Name | GSBRNA2T00047285001, LOC106399331 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NF-YB | ||||||||
Protein Properties | Length: 212aa MW: 23501.2 Da PI: 4.1388 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 49.3 | 1.2e-15 | 10 | 103 | 6 | 94 |
NF-YB 6 rflPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 +lP+a v r++k+ l + + i k+a e + fi ++++ a+d+c+ +r+t++++d++ a+ ++Gfed+ eplk+ l+ + GSBRNA2T00047285001 10 DELPLAIVRRVVKNKLSEcspeyDVSIHKEAILAFSEGAWIFIHYLSATANDNCKDSRRQTMKAEDVFKAIEDMGFEDFSEPLKASLEDF 99 689***********99652222356899***********************************************************999 PP NF-YB 91 rele 94 ++ + GSBRNA2T00047285001 100 KKKN 103 8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 7.9E-24 | 10 | 100 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.1E-6 | 11 | 80 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 7.47E-21 | 12 | 129 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MTESEKVLED ELPLAIVRRV VKNKLSECSP EYDVSIHKEA ILAFSEGAWI FIHYLSATAN 60 DNCKDSRRQT MKAEDVFKAI EDMGFEDFSE PLKASLEDFK KKNAGKKAGG GEGAASSSKP 120 KETGKRKQEG ASMQKGVRKC KSDEGDKKND ENDNTEENVN DEDDGTEENG NGEEDDEEGN 180 EENMEEEFGS GEHDEKESGD EKEADNKEED E* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00047285001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013695258.1 | 1e-149 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A078H2V0 | 1e-147 | A0A078H2V0_BRANA; BnaC03g47130D protein | ||||
STRING | Bo3g040500.1 | 1e-135 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12007 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 1e-55 | nuclear factor Y, subunit B11 |
Link Out ? help Back to Top | |
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Entrez Gene | 106399331 |
Publications ? help Back to Top | |||
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