PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00046805001 | ||||||||
Common Name | GSBRNA2T00046805001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 303aa MW: 32948.2 Da PI: 9.9883 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 25.3 | 3.4e-08 | 208 | 231 | 5 | 28 |
CHHHCHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaei 28 +r+rr++kNRe+A rsR+RK+ +i GSBRNA2T00046805001 208 RRQRRMIKNRESAARSRARKQVKI 231 79******************9766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.3E-12 | 200 | 272 | No hit | No description |
SMART | SM00338 | 3.7E-7 | 204 | 285 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 2.8E-5 | 207 | 232 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 4.64E-22 | 208 | 279 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 211 | 226 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 303 aa Download sequence Send to blast |
MGNEPPGDGG GGGALTRQGS IYSLTFDEFQ SSLGKDFGSM NMDELLKNIW TAEETQAMAG 60 LPLQRQGSLT LPRTLSTKTV DQVWKDLSKD GGGGTNLTQS QSQRQQTLGE VTLEEFLVRA 120 GVVREEAQIA AKDANTGSSG LMGLGDQSPT NNMGLVQGVV GAVSPVTPVS ADGIGKTNGD 180 SSSLSPSPYM FNGVRGRKSG TVEKVVERRQ RRMIKNRESA ARSRARKQVK IHLISTSFNQ 240 TMFWNAYTVE LEAEVAKLKE ENQELQRKQA KIMEMQKNQE MEMMNIQGGA KKKLRRTESG 300 PW* |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaves. {ECO:0000269|PubMed:18931143}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that mediates abscisic acid (ABA) signaling (PubMed:18931143, PubMed:19947981, PubMed:27424498, PubMed:27325665). Can regulate the expression of a wide spectrum of stress-related genes in response to abiotic stresses through an ABA-dependent regulation pathway. Confers ABA-dependent drought and salinity tolerance (PubMed:18931143, PubMed:27325665). Binds specifically to the ABA-responsive elements (ABRE) in the promoter of target genes to mediate stress-responsive ABA signaling (PubMed:27325665, PubMed:27424498). {ECO:0000269|PubMed:18931143, ECO:0000269|PubMed:19947981, ECO:0000269|PubMed:27325665, ECO:0000269|PubMed:27424498}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00046805001 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) (PubMed:18315698, PubMed:18931143). Induced by drought, salt and osmotic stresses (PubMed:18931143). {ECO:0000269|PubMed:18315698, ECO:0000269|PubMed:18931143}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HE616526 | 1e-164 | HE616526.1 Brassica napus abf2 gene for abscisic acid responsive elements-binding factor 2, exons 1-4. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013592175.1 | 1e-169 | PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X4 | ||||
Swissprot | Q6Z312 | 2e-86 | BZP23_ORYSJ; bZIP transcription factor 23 | ||||
TrEMBL | A0A078JGC7 | 0.0 | A0A078JGC7_BRANA; BnaA10g28780D protein | ||||
STRING | Bo6g006970.1 | 1e-161 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM734 | 27 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G45249.3 | 7e-60 | abscisic acid responsive elements-binding factor 2 |