PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00046501001 | ||||||||
Common Name | GSBRNA2T00046501001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 244aa MW: 27517.1 Da PI: 9.2919 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 130.1 | 1.7e-40 | 7 | 136 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 p+GfrF Pt+ el+++yL+ +++g + ++ + i+ +d+++veP +Lp+ + ++++++w fF++r++++a+g r++r+t+sgyWkatg GSBRNA2T00046501001 7 PVGFRFYPTEVELISFYLRIQLDGGHATIYSLIPILDVFNVEPTQLPNlageRWQGDREQWLFFVPRQEREARGGRPSRTTNSGYWKATG 96 79***************************999**************9656766666888******************************* PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 + +v+s +++++g+kkt+vfy g+apkg+kt+W m+ey+ GSBRNA2T00046501001 97 SPGPVFSPDNRVIGVKKTMVFYIGKAPKGRKTKWKMNEYK 136 ***************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-44 | 6 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.883 | 6 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.2E-20 | 7 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MVEELPPVGF RFYPTEVELI SFYLRIQLDG GHATIYSLIP ILDVFNVEPT QLPNLAGERW 60 QGDREQWLFF VPRQEREARG GRPSRTTNSG YWKATGSPGP VFSPDNRVIG VKKTMVFYIG 120 KAPKGRKTKW KMNEYKAIDE TASVSTIPKL RHEFSVCRIY IKSGSSRAFD RRPTEGSGTE 180 TKLPNNRAER SSCATISTSP ETSYSGGGDQ VQLPVNVTTT QRISDMVDAL SQPFWEWEQL 240 NWS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-32 | 5 | 167 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-32 | 5 | 167 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-32 | 5 | 167 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-32 | 5 | 167 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-32 | 5 | 167 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 2e-32 | 5 | 167 | 17 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00046501001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009150275.1 | 1e-170 | PREDICTED: putative NAC domain-containing protein 61 | ||||
Refseq | XP_013652928.1 | 1e-170 | putative NAC domain-containing protein 61 | ||||
Refseq | XP_013656720.1 | 1e-170 | putative NAC domain-containing protein 61 | ||||
Swissprot | Q9M290 | 1e-129 | NAC61_ARATH; Putative NAC domain-containing protein 61 | ||||
TrEMBL | A0A078H0I9 | 1e-180 | A0A078H0I9_BRANA; BnaA06g19740D protein | ||||
STRING | Bra019459.1-P | 1e-170 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 1e-144 | NAC domain containing protein 61 |
Publications ? help Back to Top | |||
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