PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00046227001 | ||||||||
Common Name | GSBRNA2T00046227001, LOC106356519 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 190aa MW: 20780.4 Da PI: 8.8264 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.8 | 0.0016 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F + L H +H GSBRNA2T00046227001 69 YKCGVCDKVFLSYQALGGHKASH 91 9*********8887777777666 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0017 | 111 | 130 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++C+ksF++ L H GSBRNA2T00046227001 111 HVCSICHKSFTTGQALGGHK 130 79*********988887665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.2E-11 | 68 | 92 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.55E-8 | 68 | 133 | No hit | No description |
PROSITE profile | PS50157 | 9.224 | 69 | 96 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.089 | 69 | 91 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.7E-12 | 111 | 135 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.577 | 111 | 138 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.34 | 111 | 133 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 113 | 133 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MALEALNSPR IASPVPTLFE EHWTKGKRSK RSRSDHPHRL TEEEYLAFCL MLLARDGDRH 60 HVEEEKTVYK CGVCDKVFLS YQALGGHKAS HRNFSSGGDV KPTTPAAVKS HVCSICHKSF 120 TTGQALGGHK RCHYDGSSNV VSNSEGVGST SHVSGNSRRG FDLNITPINE LSPDDEVKSP 180 LPSKKLRLT* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems and leaves. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:8662738, ECO:0000269|PubMed:9132053}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in abiotic stress responses. Can repress the stress responsive genes DREB1A and LTI78. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. {ECO:0000269|PubMed:12032082, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20140232, ECO:0000269|PubMed:8662738}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00046227001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt, cold and drought stresses. Down-regulated by gibberellin. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:11351099, ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:8662738}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189413 | 0.0 | AC189413.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061E18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013651714.1 | 1e-139 | zinc finger protein AZF3 | ||||
Swissprot | Q96289 | 5e-76 | ZAT10_ARATH; Zinc finger protein ZAT10 | ||||
TrEMBL | A0A078H020 | 1e-138 | A0A078H020_BRANA; BnaC07g16940D protein | ||||
STRING | Bo7g065200.1 | 1e-136 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1211 | 28 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43170.1 | 2e-69 | zinc-finger protein 3 |
Link Out ? help Back to Top | |
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Entrez Gene | 106356519 |