PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00046175001
Common NameGSBRNA2T00046175001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 225aa    MW: 25799.9 Da    PI: 6.9513
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00046175001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.28.1e-2067120457
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                          ++++t+eq++ Le  Fe+++++   ++e++A +lgL+ rqV vWFqNrRa++k+
  GSBRNA2T00046175001  67 KRKLTDEQVNMLEFSFENEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKN 120
                          4589************************************************95 PP
2HD-ZIP_I/II120.21e-3866157293
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          +kr+l++eqv++LE sFe+e+kLe+ rK+++a eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+++  +++Le++v +L e+l
  GSBRNA2T00046175001  66 RKRKLTDEQVNMLEFSFENEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKSQHDTVVLGQCQLESQVLKLSEQL 155
                          8***************************************************************************************99 PP

          HD-ZIP_I/II  92 ke 93 
                          +e
  GSBRNA2T00046175001 156 SE 157
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.7E-1864125IPR001356Homeobox domain
SuperFamilySSF466895.43E-1864123IPR009057Homeodomain-like
PROSITE profilePS5007116.16366121IPR001356Homeobox domain
CDDcd000869.08E-1666122No hitNo description
PfamPF000464.6E-1767120IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.4E-2068128IPR009057Homeodomain-like
PRINTSPR000312.3E-592101IPR000047Helix-turn-helix motif
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PRINTSPR000312.3E-5101117IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDQNVLGTQV YSYMTQTHGH CIIVNQIDGS SSGEGSKPVK RRRRRRSKGS SATSEDDMTA  60
IGVMMRKRKL TDEQVNMLEF SFENEHKLES GRKEKIAGEL GLDPRQVAVW FQNRRARWKN  120
KKLEEEYAKL KSQHDTVVLG QCQLESQVLK LSEQLSEAQN EIRKLSERLA QETLTNSPSS  180
PRSVEANGAP IDFEFPPDIN YNIPFYMSDN NYLQNMEYWD GLYV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13944KRRRRR
23945KRRRRRR
34045RRRRRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root meristem, late flowers and siliques. {ECO:0000269|PubMed:15567172, ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a regulatory role in auxin/cytokinin signaling during root development. {ECO:0000269|PubMed:15567172}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00591DAPTransfer from AT5G66700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00046175001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), by salt stress, by indole-3-acetic acid (IAA) and during darkness conditions. Down-regulated by cytokinin. {ECO:0000269|PubMed:15567172, ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013688679.11e-168homeobox-leucine zipper protein ATHB-53-like isoform X2
SwissprotQ9LVR01e-110ATB53_ARATH; Homeobox-leucine zipper protein ATHB-53
TrEMBLA0A078GZ361e-168A0A078GZ36_BRANA; BnaC07g16610D protein
STRINGBo7g064620.11e-166(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126021731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66700.11e-112homeobox 53
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]