PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00045908001 | ||||||||
Common Name | GSBRNA2T00045908001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 235aa MW: 26002.2 Da PI: 5.5151 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.5 | 8.4e-10 | 6 | 56 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 + WT+ E l d+v+++G+g W+ I + k R+ ++k++w+++ GSBRNA2T00045908001 6 KMWTPKEVTALRDGVRKYGSGKWSGILSDSKygralKARSNVDLKDKWRNL 56 67***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.81 | 1 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.34E-13 | 3 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0059 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-13 | 4 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.4E-7 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 6.84E-16 | 6 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MGGRKKMWTP KEVTALRDGV RKYGSGKWSG ILSDSKYGRA LKARSNVDLK DKWRNLGAGT 60 FGSRKKKVLA IVAVANDNDG EQEIVPASPV NDDDEGLFAS VDTFILEAIT SWKKLLRPNK 120 KWILHHVEKN NRYTISPTYA AAEAEQSSPQ LLLEGVVNHT KSQEDGEAFK INGMTEEEAS 180 SAAAIALEEA EFARAEAEEA AREADRAEEE AEAMQDYAKA VKEVWKNLMR SQTW* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. {ECO:0000269|PubMed:19102728}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00045908001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009115670.1 | 1e-134 | PREDICTED: telomere repeat-binding factor 3-like | ||||
Refseq | XP_009115671.1 | 1e-134 | PREDICTED: telomere repeat-binding factor 3-like | ||||
Refseq | XP_009115672.1 | 1e-134 | PREDICTED: telomere repeat-binding factor 3-like | ||||
Refseq | XP_009115673.1 | 1e-134 | PREDICTED: telomere repeat-binding factor 3-like | ||||
Refseq | XP_009115674.1 | 1e-134 | PREDICTED: telomere repeat-binding factor 3-like | ||||
Refseq | XP_013691529.1 | 1e-134 | telomere repeat-binding factor 3-like isoform X1 | ||||
Swissprot | Q9M2X3 | 5e-34 | TRB3_ARATH; Telomere repeat-binding factor 3 | ||||
TrEMBL | A0A078GYQ7 | 1e-169 | A0A078GYQ7_BRANA; BnaAnng03960D protein | ||||
TrEMBL | A0A3P5YL62 | 1e-169 | A0A3P5YL62_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F4N5 | 1e-169 | M4F4N5_BRARP; Uncharacterized protein | ||||
STRING | Bra036035.1-P | 1e-170 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM21564 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49850.1 | 8e-36 | telomere repeat binding factor 3 |
Publications ? help Back to Top | |||
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