PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00045902001 | ||||||||
Common Name | GSBRNA2T00045902001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 419aa MW: 46845.4 Da PI: 5.4304 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 324.9 | 1.6e-99 | 30 | 415 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl..fsev 87 ++lLl+cA+a++s+d++la++lL+ l+++aspdg +++qRl++ f++AL +r +++ ++l++++ ++ +++ ++++++++++l f ++ GSBRNA2T00045902001 30 EQLLLHCATAIDSNDAALAHQLLWVLNNIASPDGdSSTQRLTSAFVRALLSRAVSKIPTLFSTFgNTVFQPPADEIHRFSVVELagFIDL 119 79********************************779***************************877778888899999999999***** PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgv 174 +P+++f++++aN+aIl aveg ++vHi+D+++++++Q p+L++a+a++ ++pp l++T+v+s++++ + ++e +g++L +fA++ ++ GSBRNA2T00045902001 120 TPWHRFGFIAANEAILTAVEGYSTVHIVDLSLTHCMQIPTLIDAMATKLNKPPLLKLTVVSSASNFppfINISYEDLGSKLVNFATSRNI 209 **************************************************************999999999******************* PP GRAS 175 pfefnvl...vakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqeadhnsesF 253 +++f+++ +++ +++l l++Lr+ p +Eal+Vn++++l +++de+++ +s r+ +L++++sl+P++v+++e++ad++se++ GSBRNA2T00045902001 210 EMQFTIIpstYSDGFSSL-LQHLRMYPtsyNEALVVNCHMMLRYIPDETLTPSSpsslsLRNVFLNQLRSLNPTMVTLIEEDADLTSENL 298 ******988666777777.99999999999****************9998777666666899**************************** PP GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343 ++r+ +a++y++ fd++++ + se+r+ +E+e ++++i+nvva+eg er+er+et+++W er+++ F+ v+++e+aa++ k++l + GSBRNA2T00045902001 299 VTRLRSAFNYFWIPFDTTDTFM---SEQRRLYEAE-ISWKIENVVAKEGVERVERTETKGRWLERMRDNDFGGVRVREEAASDLKAMLGE 384 *********************7...9*********.****************************************************** PP GRAS 344 vk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 ++ ++g++ +++++slvl+Wk++++v++++W GSBRNA2T00045902001 385 HAvGWGMKKDDDDESLVLTWKGHSVVFATVW 415 ******************************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 44.436 | 3 | 395 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.5E-97 | 30 | 415 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 419 aa Download sequence Send to blast |
MTRTGIISPT RFPSLKSQRC GSGGDASFME QLLLHCATAI DSNDAALAHQ LLWVLNNIAS 60 PDGDSSTQRL TSAFVRALLS RAVSKIPTLF STFGNTVFQP PADEIHRFSV VELAGFIDLT 120 PWHRFGFIAA NEAILTAVEG YSTVHIVDLS LTHCMQIPTL IDAMATKLNK PPLLKLTVVS 180 SASNFPPFIN ISYEDLGSKL VNFATSRNIE MQFTIIPSTY SDGFSSLLQH LRMYPTSYNE 240 ALVVNCHMML RYIPDETLTP SSPSSLSLRN VFLNQLRSLN PTMVTLIEED ADLTSENLVT 300 RLRSAFNYFW IPFDTTDTFM SEQRRLYEAE ISWKIENVVA KEGVERVERT ETKGRWLERM 360 RDNDFGGVRV REEAASDLKA MLGEHAVGWG MKKDDDDESL VLTWKGHSVV FATVWVPM* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 1e-52 | 24 | 417 | 28 | 420 | Protein SHORT-ROOT |
5b3h_E | 1e-52 | 24 | 417 | 28 | 420 | Protein SHORT-ROOT |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00045902001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009115681.1 | 0.0 | PREDICTED: scarecrow-like protein 32 | ||||
Swissprot | Q9SN22 | 0.0 | SCL32_ARATH; Scarecrow-like protein 32 | ||||
TrEMBL | A0A078GZH7 | 0.0 | A0A078GZH7_BRANA; BnaAnng03920D protein | ||||
STRING | Bra036041.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5445 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49950.1 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|