PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00045638001
Common NameGSBRNA2T00045638001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 384aa    MW: 42872.7 Da    PI: 4.8526
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00045638001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.6e-20119168255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+G+r+++ +g+W+AeIrdp++     r +lg+f+taeeAa+a++aa+++++g
  GSBRNA2T00045638001 119 QYRGIRQRP-WGKWAAEIRDPRK---GSREWLGTFDTAEEAARAYDAAARRIRG 168
                          69*******.**********954...39************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.83E-17119177No hitNo description
PROSITE profilePS5103224.54119176IPR001471AP2/ERF domain
SMARTSM003807.6E-40119182IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-22119177IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-32119177IPR001471AP2/ERF domain
PfamPF008478.0E-13120168IPR001471AP2/ERF domain
PRINTSPR003673.3E-11120131IPR001471AP2/ERF domain
PRINTSPR003673.3E-11142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MCGGAIISDF IPPPSFRRVT SEFLWPDLKK SKGKASKKRS DFFDLDDEFE ADFQGFEDDD  60
ASFDCEDDDD DVFAKVKPFV FTATTKPLAS PPTGSVSGKK IIESGGQAEK SAKRKRKNQY  120
RGIRQRPWGK WAAEIRDPRK GSREWLGTFD TAEEAARAYD AAARRIRGSK AKVNFPEESN  180
NNRSVSQKRP SAKKLVAKPN QSPALVQQPM SQYCNNSFGD VSFVEEKPQM YNNQFGLANS  240
YNNHYFSSDQ GSNSFDCSEF GWSDHGPKTP EISSMLVNNN QAPFIEVTNA AKKLKPSSDD  300
LMAYLDNALW ESPSPLEVEA MLGVDAAAVT QGEENPMDLW SLDDINYMLE GDFAVEGGMV  360
QVTTWSLLHR FYLIYESLLN SLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-221181851381Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutive in flowers, leaves, stems, and roots. {ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in carotenoid biosynthesis regulation. Binds to the 5'-ATCTA-3' element present in the promoter of phytoene synthase (PSY) and phytoene desaturase (PDS). Involved in ethylene response and resistance to necrotrophic pathogens. Acts as a downstream regulator in the ethylene signaling pathway. Partially redundant with RAP2-12. {ECO:0000269|PubMed:17873090, ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00045638001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by darkness, ethylene and Botrytis cinerea. {ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ4250871e-48JQ425087.1 Raphanus sativus dominant Rfd1 allele-linked A220 marker sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013673296.10.0ethylene-responsive transcription factor RAP2-2-like
SwissprotQ9LUM41e-169RAP22_ARATH; Ethylene-responsive transcription factor RAP2-2
TrEMBLA0A078JF830.0A0A078JF83_BRANA; BnaAnng20420D protein
STRINGBo1g134510.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.31e-157related to AP2 2
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F
    Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana.
    Plant Sci., 2015. 236: p. 37-43
    [PMID:26025519]
  4. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  5. Yao Y, et al.
    ETHYLENE RESPONSE FACTOR 74 (ERF74) plays an essential role in controlling a respiratory burst oxidase homolog D (RbohD)-dependent mechanism in response to different stresses in Arabidopsis.
    New Phytol., 2017. 213(4): p. 1667-1681
    [PMID:28164334]
  6. Giuntoli B, et al.
    Age-dependent regulation of ERF-VII transcription factor activity in Arabidopsis thaliana.
    Plant Cell Environ., 2017. 40(10): p. 2333-2346
    [PMID:28741696]