PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00045496001
Common NameGSBRNA2T00045496001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 396aa    MW: 44939.4 Da    PI: 6.5686
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00045496001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.41.1e-52161421128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          l pGfrFhPtdeelv++yLk+kv++++l++ e i+++diyk++PwdLp k++++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d+
  GSBRNA2T00045496001  16 LLPGFRFHPTDEELVSFYLKRKVQHNPLSI-ELIRQLDIYKYDPWDLP-KFATGEKEWYFYCPRDRKYRNSSRPNRVTGAGFWKATGTDR 103
                          579***************************.89***************.777899*********************************** PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++s+ +++ +glkk+Lvfykgra kg+ktdW+mhe+r+
  GSBRNA2T00045496001 104 PIYSSeGNKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRM 142
                          ****956667***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-5812174IPR003441NAC domain
PROSITE profilePS5100557.116174IPR003441NAC domain
PfamPF023651.6E-2518142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MEERNNDGDQ KMEEVLLPGF RFHPTDEELV SFYLKRKVQH NPLSIELIRQ LDIYKYDPWD  60
LPKFATGEKE WYFYCPRDRK YRNSSRPNRV TGAGFWKATG TDRPIYSSEG NKCIGLKKSL  120
VFYKGRAAKG VKTDWMMHEF RMPSLSVPSP STKRFFDSPV SPNDSWAICR IFKKTNTTTL  180
RAMPHSFVSS LPSETSIDTM SSDQKLSNTS HFSSDKILKT SSHFQFHHEN MSSTPKTSTS  240
PTSHVATINP FSYLDFTSYE ETTNVFNPVS CLDHQHLTNL FLATQETQPQ FPRLASPNES  300
PSFLVNMSSS DCALLGECTS QIDLSVMLAQ EQCPALVSLP QEYQEKGLEG NGEIKNLGGC  360
NEDYHYQDVK HNMTLLESYY SSLSNGELAN CFSTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-541617817169NO APICAL MERISTEM PROTEIN
1ut4_B2e-541617817169NO APICAL MERISTEM PROTEIN
1ut7_A2e-541617817169NO APICAL MERISTEM PROTEIN
1ut7_B2e-541617817169NO APICAL MERISTEM PROTEIN
3swm_A2e-541617820172NAC domain-containing protein 19
3swm_B2e-541617820172NAC domain-containing protein 19
3swm_C2e-541617820172NAC domain-containing protein 19
3swm_D2e-541617820172NAC domain-containing protein 19
3swp_A2e-541617820172NAC domain-containing protein 19
3swp_B2e-541617820172NAC domain-containing protein 19
3swp_C2e-541617820172NAC domain-containing protein 19
3swp_D2e-541617820172NAC domain-containing protein 19
4dul_A2e-541617817169NAC domain-containing protein 19
4dul_B2e-541617817169NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}.
UniprotTISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00045496001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893850.0AC189385.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB052E19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603948.10.0PREDICTED: protein FEZ-like
SwissprotQ9ZVH00.0FEZ_ARATH; Protein FEZ
TrEMBLA0A078JFQ00.0A0A078JFQ0_BRANA; BnaCnng46350D protein
TrEMBLA0A0D3DR820.0A0A0D3DR82_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FW460.0A0A3P6FW46_BRAOL; Uncharacterized protein
STRINGBo8g076410.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.10.0NAC family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]