PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00045453001 | ||||||||
Common Name | GSBRNA2T00045453001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HSF | ||||||||
Protein Properties | Length: 128aa MW: 14771 Da PI: 8.4721 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 52.2 | 1.7e-16 | 1 | 86 | 9 | 102 |
HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 +++d+++++++sws++g+sf+ +d+++f ++vLpk+ ++ + FvR n+Y F+kv+ +e+ e++h++F +gk el +i+ GSBRNA2T00045453001 1 MVDDPSTDSIVSWSQDGKSFIFWDQDKFCSDVLPKFGLSTSPTFFVRLTNIYCFRKVEVSEH--------CEYAHDYFVRGKPELTVEIE 82 89*********************************9999*******************9995........6******************* PP XXXX CS HSF_DNA-bind 99 rkks 102 r+ + GSBRNA2T00045453001 83 RQFK 86 9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 3.6E-15 | 1 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 7.2E-21 | 1 | 84 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.3E-16 | 1 | 83 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.9E-17 | 1 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MVDDPSTDSI VSWSQDGKSF IFWDQDKFCS DVLPKFGLST SPTFFVRLTN IYCFRKVEVS 60 EHCEYAHDYF VRGKPELTVE IERQFKERGA PIKLAIKPHE PAYKESKERI RAFMLAKKAA 120 RSLSLKE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-13 | 1 | 84 | 36 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-13 | 1 | 84 | 36 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-13 | 1 | 84 | 36 | 129 | Heat shock factor protein 1 |
5hdg_A | 1e-13 | 1 | 84 | 17 | 110 | Heat shock factor protein 1 |
5hdn_A | 1e-13 | 1 | 84 | 17 | 110 | Heat shock factor protein 1 |
5hdn_B | 1e-13 | 1 | 84 | 17 | 110 | Heat shock factor protein 1 |
5hdn_C | 1e-13 | 1 | 84 | 17 | 110 | Heat shock factor protein 1 |
5hdn_D | 1e-13 | 1 | 84 | 17 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00045453001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013618084.1 | 2e-86 | PREDICTED: heat stress transcription factor B-4b-like | ||||
TrEMBL | A0A078JC91 | 3e-89 | A0A078JC91_BRANA; BnaUnng01050D protein | ||||
STRING | Bra029226.1-P | 9e-86 | (Brassica rapa) | ||||
STRING | Bo2g165560.1 | 9e-86 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM965 | 28 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 2e-18 | heat shock factor 4 |
Publications ? help Back to Top | |||
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