PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00045449001 | ||||||||
Common Name | GSBRNA2T00045449001, LOC106438377 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 247aa MW: 28248.7 Da PI: 7.4296 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.1 | 1.3e-07 | 98 | 117 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f+ G C++Gd+C FaHg GSBRNA2T00045449001 98 CPAFRN-GACHRGDTCEFAHG 117 666666.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.267 | 92 | 119 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.9E-4 | 92 | 118 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.4E-6 | 97 | 117 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-5 | 98 | 120 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 19 | 127 | 150 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MLKSVNPMTF YGIGEQQFPT LGYIVSKPGN AGAYEIDPPL PTVNDVIYSS DEFRMYAYKI 60 KRCPRTRSHD WTECPYAHRG EKATRRDPRR YSYCAVACPA FRNGACHRGD TCEFAHGVFE 120 YWLHPARYRT RACNAGNMCQ RKVCFFAHAP EQLRQSEGKH RCRYAYRPVR TTVARGRNGD 180 GVGIREDGED FDTWQSPVKS GESELDINEE RLLKCWSGMS IVDDHYDPSD LDLNLSHIDW 240 ISALVD* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.2469 | 0.0 | seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Specifically expressed in embryo (at protein level). {ECO:0000269|PubMed:9501112}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Embryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00045449001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY350710 | 0.0 | AY350710.1 Brassica oleracea clone BAC Bo37N21, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013611019.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 54 | ||||
Refseq | XP_013734961.1 | 0.0 | zinc finger CCCH domain-containing protein 54 | ||||
Swissprot | O65036 | 1e-153 | C3H54_ARATH; Zinc finger CCCH domain-containing protein 54 | ||||
TrEMBL | A0A078JEY6 | 0.0 | A0A078JEY6_BRANA; BnaC09g47920D protein | ||||
TrEMBL | A0A0D3EH60 | 0.0 | A0A0D3EH60_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6DS01 | 0.0 | A0A3P6DS01_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g175550.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11527 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07500.1 | 1e-155 | C3H family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106438377 |
Publications ? help Back to Top | |||
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