PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00045216001

Common Name

GSBRNA2T00045216001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 251aa MW: 27120.1 Da PI: 7.1379

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00045216001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00057	118	140	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++Fs+ L H +H GSBRNA2T00045216001 118 YECKTCSRTFSSFQALGGHRASH 140 99**********99999998887 PP
2	zf-C2H2	13.6	0.0002	157	179	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H GSBRNA2T00045216001 157 HECSICGSEFTSGQALGGHMRRH 179 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.5E-12	117	142	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.13E-8	117	179	No hit	No description
PROSITE profile	PS50157	11.032	118	145	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.13	118	140	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	120	140	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	8.3E-4	155	179	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.3E-11	156	180	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.019	157	179	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.868	157	184	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	159	179	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MMSQDHVGSD QTQIIKGKRT KRQRSLSSTF LVAAAAATTN TSSSSSAGDG GGGRAVSDEY 60 NSAVSSPVTT TDCTEEEEDM AICLIMLARG AALSPDLKNS RKADKTFSPA ENSSFFVYEC 120 KTCSRTFSSF QALGGHRASH KKPREGQKNN FKANKVHECS ICGSEFTSGQ ALGGHMRRHR 180 TATTAVIPVA TTEVSRNSTE EETENLSSYI EQRKYLPLDL NLPAPEDDLR ESKFQGIVFS 240 TTPALIDCHY *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.21312	1e-163	flower

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269\|PubMed:9132053}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00045216001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269\|PubMed:12837949, ECO:0000269\|PubMed:16244149}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013633836.1	1e-153	PREDICTED: zinc finger protein ZAT5-like
Swissprot	Q681X4	1e-123	ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBL	A0A078GYD7	0.0	A0A078GYD7_BRANA; BnaA04g16320D protein
STRING	Bo4g165160.1	1e-153	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5862	27	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-92	C2H2 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]