PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00045201001 | ||||||||
Common Name | GSBRNA2T00045201001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 25649.4 Da PI: 5.1179 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61 | 2.7e-19 | 101 | 151 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp++ng +r++lg++ t+e+Aa a+++a+ +l+g GSBRNA2T00045201001 101 QYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYETPEDAAVAYDRAAFQLKG 151 59*******.***********9998..***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.6E-37 | 101 | 165 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-23 | 101 | 160 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-32 | 101 | 160 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.56E-30 | 101 | 161 | No hit | No description |
PROSITE profile | PS51032 | 23.907 | 101 | 159 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-13 | 102 | 113 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.7E-13 | 102 | 151 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-13 | 141 | 161 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MSGSDYSDLT SSADSVTNGV NPPVFYRNPS FSNVILNDSW SDLPLSVDDS QDMAIYNTLR 60 DAFSSGWTPA VPPPVVAEEV KQPTATAASG SRAPARQKGM QYRGVRRRPW GKFAAEIRDP 120 KKNGARVWLG TYETPEDAAV AYDRAAFQLK GSKAKLNFPH LIGSCEYEPV RIRPRRRSPE 180 PSVSDYSSPE QKSVGHVEEG ESSFVVPELG FTVDQLYSDG SYLMDQSSYL YF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-32 | 98 | 166 | 2 | 70 | ATERF1 |
3gcc_A | 7e-32 | 98 | 166 | 2 | 70 | ATERF1 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitously expressed after ethylene treatment. {ECO:0000269|PubMed:11950980}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00311 | DAP | Transfer from AT2G44840 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00045201001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013725494.1 | 1e-167 | ethylene-responsive transcription factor 13-like | ||||
Swissprot | Q8L9K1 | 1e-128 | ERF99_ARATH; Ethylene-responsive transcription factor 13 | ||||
TrEMBL | A0A078GZB8 | 1e-169 | A0A078GZB8_BRANA; BnaA04g25900D protein | ||||
TrEMBL | A0A3P6D0C9 | 1e-169 | A0A3P6D0C9_BRACM; Uncharacterized protein | ||||
STRING | Bra037630.1-P | 1e-159 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 1e-110 | ethylene-responsive element binding factor 13 |
Publications ? help Back to Top | |||
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