PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00045162001 | ||||||||
Common Name | GSBRNA2T00045162001, LOC106429273 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 258aa MW: 28858.1 Da PI: 8.5859 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.1 | 2e-15 | 19 | 113 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ffk+l +d +++++ +p++f ++ + k + + ++tl+ +g sW v+l+ + ++ + +kGW +F ++n+L +++f++F+ +g+++ GSBRNA2T00045162001 19 FFKILADEDLSSESMRLIPNEFWRSSECK-NLPPKVTLKVAWGSSWPVNLS-TFMGCYLMERKGWDKFLNDNHLGDNEFLTFTNEGNNCI 106 99*********************998544.56779***************4.3333457778*********************6666665 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 +v +f+k GSBRNA2T00045162001 107 --TVDIFQK 113 ..8888876 PP | |||||||
2 | B3 | 52.3 | 1e-16 | 173 | 252 | 11 | 96 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + + +l++p +fa+eh+ k + ++ ++ d++g+ Wev + + g+ ++++GW+ ++ gL +gD+++F+l++ +e+v+ v GSBRNA2T00045162001 173 SHLTLLSIPVTFAKEHMPK-VR-TKFVIHDPKGKPWEVVY--VPSNGSKLFSSGWRFLANGYGLAVGDVCTFRLVRP--KEMVLEV 252 445679**********644.33.58***************..9999999************************9874..3345555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.4E-17 | 15 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-16 | 17 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.65E-13 | 18 | 111 | No hit | No description |
PROSITE profile | PS50863 | 12.449 | 19 | 114 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-13 | 19 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.2E-14 | 19 | 113 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-20 | 157 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.08E-21 | 159 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.929 | 163 | 256 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.21E-14 | 166 | 253 | No hit | No description |
SMART | SM01019 | 1.4E-14 | 166 | 256 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.2E-14 | 171 | 249 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MARNIAFGRI QEDMNKTSFF KILADEDLSS ESMRLIPNEF WRSSECKNLP PKVTLKVAWG 60 SSWPVNLSTF MGCYLMERKG WDKFLNDNHL GDNEFLTFTN EGNNCITVDI FQKNCVEILK 120 PLNTSSSNVK NEEMSCVDPV IAESKKQKVD SNVYGASSSS SSAATFSLTI KKSHLTLLSI 180 PVTFAKEHMP KVRTKFVIHD PKGKPWEVVY VPSNGSKLFS SGWRFLANGY GLAVGDVCTF 240 RLVRPKEMVL EVLHASP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.18614 | 0.0 | seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00045162001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013725469.1 | 0.0 | B3 domain-containing protein At5g18000 | ||||
TrEMBL | A0A078H0V8 | 0.0 | A0A078H0V8_BRANA; BnaA04g25590D protein | ||||
STRING | Bra037663.1-P | 1e-179 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35310.1 | 1e-51 | B3 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106429273 |
Publications ? help Back to Top | |||
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