PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00045092001 | ||||||||
Common Name | GSBRNA2T00045092001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | FAR1 | ||||||||
Protein Properties | Length: 82aa MW: 9205.57 Da PI: 10.2437 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 37.2 | 9.8e-12 | 14 | 71 | 2 | 59 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetr 59 fY++Y++++GF +r+ + ++s+r+g+i r+f C+keg+ + + k+ + r++r++tr GSBRNA2T00045092001 14 FYDDYSRSLGFVMRVMSCRRSERDGRILARRFGCNKEGRCVSVRGKSGSVRKPRQSTR 71 9*************************************99988888788888888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.2E-9 | 14 | 71 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
MAVEFESEDA AKMFYDDYSR SLGFVMRVMS CRRSERDGRI LARRFGCNKE GRCVSVRGKS 60 GSVRKPRQST RGGLVRLCDS C* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.11624 | 8e-94 | seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00045092001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022572523.1 | 1e-47 | O-acyltransferase WSD1-like isoform X1 | ||||
Refseq | XP_022572524.1 | 1e-47 | O-acyltransferase WSD1-like isoform X2 | ||||
TrEMBL | A0A078GY17 | 5e-50 | A0A078GY17_BRANA; BnaA04g24970D protein | ||||
TrEMBL | M4F9G1 | 5e-50 | M4F9G1_BRARP; Uncharacterized protein | ||||
STRING | Bra037724.1-P | 8e-51 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3918 | 28 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 2e-41 | FAR1 family protein |
Publications ? help Back to Top | |||
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