PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00045003001 | ||||||||
Common Name | GSBRNA2T00045003001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 169aa MW: 18496.5 Da PI: 4.9162 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 41.1 | 4e-13 | 28 | 87 | 4 | 63 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +++ +r+ +NRe+ArrsR RK++ ++ L+ + +L++ N++ l ++++ k ++e+ GSBRNA2T00045003001 28 DRKRKRMLSNRESARRSRMRKQKHVDDLTAQINQLSNDNRQILTSLTVTTQLYTKIQAEN 87 7899***********************************999998888888888877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.3E-17 | 25 | 89 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 8.2E-10 | 27 | 72 | No hit | No description |
PROSITE profile | PS50217 | 10.151 | 27 | 90 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.4E-10 | 28 | 85 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.91E-12 | 29 | 80 | No hit | No description |
CDD | cd14702 | 1.47E-21 | 30 | 80 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 32 | 47 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MASSSSTYRS SSSSDGGNPS GSAVAVDDRK RKRMLSNRES ARRSRMRKQK HVDDLTAQIN 60 QLSNDNRQIL TSLTVTTQLY TKIQAENSIL TAQMTELSTR LESLNEIVDL VTATNGGVDQ 120 IDGCGFDDRT VGINCDGYYD DMMSGVNPWG GSVYSNQPIM ANDMMNMY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 28 | 49 | RKRKRMLSNRESARRSRMRKQK |
2 | 41 | 48 | RRSRMRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.4397 | 0.0 | bud| leaf| microspore-derived embryo| root| seed| vegetative meristem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the shoot meristem during vegetative to reproductive phase transition. {ECO:0000269|PubMed:22319055}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to specific DNA sequences in target gene promoters. BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000250|UniProtKB:O65683, ECO:0000269|PubMed:29348240}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00045003001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232550 | 0.0 | AC232550.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011J16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009112471.1 | 1e-121 | PREDICTED: bZIP transcription factor 2-like | ||||
Swissprot | Q9SI15 | 8e-86 | BZIP2_ARATH; bZIP transcription factor 2 | ||||
TrEMBL | A0A078GYJ2 | 1e-119 | A0A078GYJ2_BRANA; BnaA09g09500D protein | ||||
TrEMBL | A0A397Y143 | 1e-119 | A0A397Y143_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F824 | 1e-119 | M4F824_BRARP; Uncharacterized protein | ||||
STRING | Bra037235.1-P | 1e-120 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM501 | 28 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18160.1 | 2e-83 | basic leucine-zipper 2 |
Publications ? help Back to Top | |||
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