PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00044905001 | ||||||||
Common Name | GSBRNA2T00044905001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 261aa MW: 29943.2 Da PI: 10.4744 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.9 | 1.7e-16 | 17 | 62 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l ++v+ +G++ W+ Iar+m+ gRt+k+c++rw++ GSBRNA2T00044905001 17 RGHWKPSEDFKLQELVTVFGPKKWNHIARKMQ-GRTGKSCRLRWFNQ 62 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 69 | 111 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + ++++eE+e+l+ +++ +G++ W++Ia+ ++ gRt++ +k++w+ GSBRNA2T00044905001 69 KSAFSEEEEEKLLAVHRTFGNK-WSLIAKLFP-GRTDNAVKNHWH 111 578*******************.*********.***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.999 | 12 | 63 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-12 | 16 | 65 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.79E-28 | 17 | 110 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-14 | 17 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 18 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.38E-11 | 20 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.71 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.61E-11 | 71 | 111 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-21 | 71 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MMHQENKKKH LSKVCTRGHW KPSEDFKLQE LVTVFGPKKW NHIARKMQGR TGKSCRLRWF 60 NQLDPRIIKS AFSEEEEEKL LAVHRTFGNK WSLIAKLFPG RTDNAVKNHW HILMARKLRK 120 QSISYSKSRK RQTPSPDEIA PLNLLPSFNL FPGFVGGEST EFKNYSWKMP KEESANLRDQ 180 FLLEEYCSMR MSMQYLGHHH HQHGFSTLPA DSVELHTRYL SNSQPSSSSP PTSALSTSGA 240 ENTMTTKPPR FIDFLGVGAS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-32 | 8 | 118 | 18 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.15166 | 0.0 | seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00044905001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013728631.1 | 0.0 | transcriptional activator Myb-like | ||||
TrEMBL | A0A078GYN3 | 0.0 | A0A078GYN3_BRANA; BnaC04g31750D protein | ||||
STRING | Bra025652.1-P | 1e-162 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6300 | 18 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G29020.2 | 5e-84 | myb domain protein 110 |
Publications ? help Back to Top | |||
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