PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00044902001

Common Name

GSBRNA2T00044902001, LOC106432304

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 441aa MW: 47301.6 Da PI: 5.5792

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00044902001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.1	4.5e-39	124	183	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ GSBRNA2T00044902001 124 PDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNP 183 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-32	120	181	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.6E-32	126	182	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.64	128	182	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	130	166	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MSDPAIKLFG KTIPLPELLG GDLTEQQDQN PVRLSDSCTG DDEEMGDSGL AGGGGGDDGG 60 CGDSESQKEE KDTECGDESL CNESSKVSAA SSITEKTETT KVAKTDEETS QNGTCSQEGK 120 LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN 180 KNPASHFNRH VTITSAEAMQ KAAAARTADN GTSLLTFGSD SVLCESMASG LNLADKSMLK 240 KTEASAGLKI TVPLNPSKEQ AGTISPLPCF PGPPPPPPTW PYAWNGVSWT AVPFYPPPAY 300 WSYPGVSPGT WNSIAWMPQP TSPSAGSGPN SPTLGKHSRD ESIAEPGTVL EETESPLGRE 360 KSKSERCLWV PKTLRIDDPE EAAKSSIWET LGIKKDEKAD TFGAFRSPNK EKSSLSQGRR 420 PELQANPAAL SRSANFHESS *

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MSDPAIKLFG KTIPLPELLG GDLTEQQDQN PVRLSDSCTG DDEEMGDSGL AGGGGGDDGG  60
CGDSESQKEE KDTECGDESL CNESSKVSAA SSITEKTETT KVAKTDEETS QNGTCSQEGK  120
LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN  180
KNPASHFNRH VTITSAEAMQ KAAAARTADN GTSLLTFGSD SVLCESMASG LNLADKSMLK  240
KTEASAGLKI TVPLNPSKEQ AGTISPLPCF PGPPPPPPTW PYAWNGVSWT AVPFYPPPAY  300
WSYPGVSPGT WNSIAWMPQP TSPSAGSGPN SPTLGKHSRD ESIAEPGTVL EETESPLGRE  360
KSKSERCLWV PKTLRIDDPE EAAKSSIWET LGIKKDEKAD TFGAFRSPNK EKSSLSQGRR  420
PELQANPAAL SRSANFHESS *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vasculature of cotyledons and hypocotyls, leaves and roots. {ECO:0000269\|PubMed:19619493}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00044902001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352939	1e-148	AK352939.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-18-K13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013613519.1	0.0	PREDICTED: cyclic dof factor 2
Swissprot	Q93ZL5	0.0	CDF2_ARATH; Cyclic dof factor 2
TrEMBL	A0A078GXM9	0.0	A0A078GXM9_BRANA; BnaC04g31720D protein
STRING	Bo00578s060.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13795	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	0.0	cycling DOF factor 2

Link Out ? help Back to Top
Entrez Gene	106432304

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]