PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00044326001
Common NameGSBRNA2T00044326001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 264aa    MW: 30511.8 Da    PI: 7.8904
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00044326001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind29.61.7e-0924108297
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Flkk y i++d++++++isw  ngns++v+ +  ++    +++  hs   S  R    YgF+++ + ++        +e++++ F +g+ 
  GSBRNA2T00044326001  24 FLKKAYGIVNDPSTDSMISWGPNGNSLIVHRPLPLEY--TESFLFHSGALSMER-FVAYGFTMTVSGSQ--------VEYANDDFVRGQP 102
                          9******************************999988..556666888888877.668****9988875........7************ PP

                          XXXXXX CS
         HSF_DNA-bind  92 elleki 97 
                          + leki
  GSBRNA2T00044326001 103 QRLEKI 108
                          ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.3E-520111IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.18E-921108IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.7E-1023108IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-824108IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004154.2E-7143225IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.7E-7148223IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-5148224IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.94E-10149223IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MEFTRDEAFD RALLRDIKDR VFYFLKKAYG IVNDPSTDSM ISWGPNGNSL IVHRPLPLEY  60
TESFLFHSGA LSMERFVAYG FTMTVSGSQV EYANDDFVRG QPQRLEKICD PFVARVKQHR  120
ELRLKQDNDR KRHWEEIRSY GMVVEIFKHI YSVVDDPATN SFISWGPNGK SFIVLDPQRC  180
ACYCFPYNLL EECGFTKTVS GSQMEFASEN FVAGKPELIK KISEKHKPAM IAYTKKFREW  240
MEAFSRNPAM EKRTDYVLQA SSP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00044326001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894411e-130AC189441.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069M23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013741602.10.0uncharacterized protein LOC106444703 isoform X1
RefseqXP_022573463.10.0heat stress transcription factor C-1-like isoform X2
TrEMBLA0A078GXN00.0A0A078GXN0_BRANA; BnaA03g49000D protein
TrEMBLA0A3P6AEQ00.0A0A3P6AEQ0_BRACM; Uncharacterized protein
STRINGBra024228.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142121123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.15e-21HSF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]