PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00044220001
Common NameGSBRNA2T00044220001, LOC106440173
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 314aa    MW: 34708.8 Da    PI: 4.4317
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00044220001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2431.1e-13102150254
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 
                          +  GVr++k +g+W+AeIr+p        +r +lg+f t e+A++a+ + r+++ 
  GSBRNA2T00044220001 102 KPVGVRQRK-WGKWAAEIRHP-----IlkTRRWLGTFLTLEDAHQAYKKKRREYD 150
                          678*****9.**********8.....556999*******************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.593102159IPR001471AP2/ERF domain
PfamPF008476.3E-7102150IPR001471AP2/ERF domain
SMARTSM003807.8E-9102151IPR001471AP2/ERF domain
PRINTSPR003677.8E-5103114IPR001471AP2/ERF domain
CDDcd000186.79E-17104142No hitNo description
SuperFamilySSF541711.11E-12104149IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-16105147IPR001471AP2/ERF domain
PRINTSPR003677.8E-5125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MVAIRKQRVT KKPKRDNSLS SDPQETQVLR KVRIIVADPY ATDDSSSDEE EMIPRPRPVK  60
RIVREINFPV HSESPSPDCT MTMSKRAGAA RLAASRAKLL NKPVGVRQRK WGKWAAEIRH  120
PILKTRRWLG TFLTLEDAHQ AYKKKRREYD ELLGIVDDPL PVSEGAKPEV SSSENSQCSG  180
SSTTTSLEQD ASSSSAKEEE MMKITTNDDD GVDLSEEVMF DFNFADLQIP EFFGDGGSMG  240
GGNELGLDFD CFFTDDQLDD FGLLDDISGF EESGLSALPD FDFADVELDL AGSSFLDQTS  300
PLNMTCPMKS FAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142146KKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00044220001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013737230.10.0ethylene-responsive transcription factor ERF118
RefseqXP_022551773.10.0ethylene-responsive transcription factor ERF118
SwissprotQ9CA271e-98EF118_ARATH; Ethylene-responsive transcription factor ERF118
TrEMBLA0A078JF860.0A0A078JF86_BRANA; BnaAnng20260D protein
STRINGBo2g060040.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.22e-62ERF family protein
Publications ? help Back to Top
  1. Tran MK,Schultz CJ,Baumann U
    Conserved upstream open reading frames in higher plants.
    BMC Genomics, 2008. 9: p. 361
    [PMID:18667093]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]