PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00044072001
Common NameGSBRNA2T00044072001, LOC106390582
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 331aa    MW: 36534.7 Da    PI: 5.9113
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00044072001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY901.9e-28152212259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          dD ++WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs++dp++++ tY+g+H+++
  GSBRNA2T00044072001 152 DDVFSWRKYGQKDILGAKYPRSYYRCTFRntqNCWATKQVQRSDDDPTIFDLTYKGKHTCS 212
                          8**************************998889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.677146209IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-27147212IPR003657WRKY domain
SuperFamilySSF1182901.12E-24150212IPR003657WRKY domain
SMARTSM007746.4E-39151213IPR003657WRKY domain
PfamPF031061.5E-25152211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDMSNWEQKN LLSELVHGLK AAKQLQAELG TAPSPPPPSL SSSSLCMTTE MRETLLHQIV  60
SSYEKAILML NGSSVVHSQM AEMVNLAANP VANTGKVPES PTSINGSPRS EEFIDGGGSK  120
DYNLSSKKRK MLPKWTEQVR ISPERGLEGP HDDVFSWRKY GQKDILGAKY PRSYYRCTFR  180
NTQNCWATKQ VQRSDDDPTI FDLTYKGKHT CSQGIPPRDK PDTTPNTTLI NYQNDLLANL  240
RTNLSVRTNG IESDGFSFPV TPPFYSYESD FGNGGGTFCD MGNYSRPSDF TGLVSTNTST  300
GSSPIFDVDF QFDPTAEINT GLHTFLHDSV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-18152211968OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00044072001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4423961e-106AF442396.1 Arabidopsis thaliana WRKY transcription factor 41 (WRKY41) mRNA, complete cds.
GenBankAY1336861e-106AY133686.1 Arabidopsis thaliana clone C103116 (D) unknown protein (At4g11070) mRNA, complete cds.
GenBankBT0011071e-106BT001107.1 Arabidopsis thaliana clone C103116 (A) putative WRKY family transcription factor (At4g11070) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616531.10.0PREDICTED: probable WRKY transcription factor 41
RefseqXP_013686534.10.0probable WRKY transcription factor 41
SwissprotQ8H0Y81e-152WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLA0A078JI120.0A0A078JI12_BRANA; BnaCnng45760D protein
TrEMBLA0A0D3AT350.0A0A0D3AT35_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DR480.0A0A3P6DR48_BRAOL; Uncharacterized protein
STRINGBo2g109030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-154WRKY family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]