PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00043935001
Common NameGSBRNA2T00043935001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 267aa    MW: 29976.7 Da    PI: 5.2375
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00043935001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.6e-20125176256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          +y+GVr ++ +g+++AeIrdp+ +g  +r++lg+f+ta eAa+a+++a+ +l+g+
  GSBRNA2T00043935001 125 HYRGVRMRP-WGKFAAEIRDPTRRG--TRVWLGTFDTAIEAARAYDQAAFRLRGA 176
                          7********.**********97665..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.0E-32124184IPR001471AP2/ERF domain
CDDcd000184.47E-29125183No hitNo description
PfamPF008475.2E-14125175IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22125185IPR016177DNA-binding domain
PROSITE profilePS5103223.881125183IPR001471AP2/ERF domain
SMARTSM003801.4E-34125189IPR001471AP2/ERF domain
PRINTSPR003671.5E-10126137IPR001471AP2/ERF domain
PRINTSPR003671.5E-10149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MATPSETSAL FFIKKYLLDE LSPLPNATTT NPWETSSDFS FFGSFDQTGF DFPEFETKPE  60
ITDTPLAPND SFTFQSNPPV VSQSNRKPPL KIAPPNRSEW IQFAAGKPQR EQVPLPQVAA  120
EEKRHYRGVR MRPWGKFAAE IRDPTRRGTR VWLGTFDTAI EAARAYDQAA FRLRGAKAIV  180
NFPLEVGMWE PRAENGQNKR KRDGAEEEET RVVAKVVKTE ESHGVEQVTS SLTGVDDWDL  240
TEFLSMPLFS PLSPHPPFGY PQLTVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-28124186466ATERF1
3gcc_A6e-28124186466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00437DAPTransfer from AT4G17490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00043935001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130655.10.0PREDICTED: ethylene-responsive transcription factor 6-like
SwissprotQ8VZ911e-129EF103_ARATH; Ethylene-responsive transcription factor 6
TrEMBLA0A078JGZ50.0A0A078JGZ5_BRANA; BnaA01g34910D protein
TrEMBLA0A398AM080.0A0A398AM08_BRACM; Uncharacterized protein
TrEMBLM4FGD00.0M4FGD0_BRARP; Uncharacterized protein
STRINGBra040158.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.11e-107ethylene responsive element binding factor 6
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]