PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00043861001 | ||||||||
Common Name | GSBRNA2T00043861001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 394aa MW: 45851.8 Da PI: 7.6747 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.9e-17 | 183 | 229 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd + ++ v+++G + W+ Ia+ ++ gR +kqc++rw+++l GSBRNA2T00043861001 183 KGQWTSEEDRIVIQFVEKYGLRKWSHIAQVLP-GRIGKQCRERWHNHL 229 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 235 | 277 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + W++eEd l++ +k+ G++ W+ Ia++++ gRt++++k++w+ GSBRNA2T00043861001 235 KETWSEEEDRVLIQFHKEIGNK-WAEIAKRLP-GRTENSIKNHWN 277 578*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.803 | 178 | 233 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.34E-31 | 181 | 276 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-16 | 182 | 231 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-28 | 184 | 236 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.52E-14 | 186 | 229 | No hit | No description |
Pfam | PF13921 | 7.3E-19 | 186 | 243 | No hit | No description |
PROSITE profile | PS51294 | 21.134 | 234 | 284 | IPR017930 | Myb domain |
SMART | SM00717 | 3.6E-16 | 234 | 282 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-22 | 237 | 282 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.00E-12 | 237 | 280 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 394 aa Download sequence Send to blast |
MENYVGESGF APLNKTVFTR DQEQMKEEKF PFQVVNQSKP TSFLQDFHHL DHDHQFHHHH 60 HHHGSTSSNP LLGIQTKPSC VNSSLFEHCA YQDNMVNMVN EHGPMDMKQD NMMMGMISFD 120 YPPREITKPM NFVMPDEVSC VSADNDCYKP MSFNKTKPIL TRKLSSSSSS SSWKEKKETT 180 LVKGQWTSEE DRIVIQFVEK YGLRKWSHIA QVLPGRIGKQ CRERWHNHLR PDIKKETWSE 240 EEDRVLIQFH KEIGNKWAEI AKRLPGRTEN SIKNHWNATK RRQFSKRKCR SKYPRPSLLQ 300 DYIKSLDLKA LSSSSVPARG RRRESNKKKD FVAVEEENKK NEDDLYGLDR MVPECVFTDD 360 FGFNEKLLEE GCSIDSLLDD LPQPDIDTFA HGF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-45 | 181 | 284 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-45 | 181 | 284 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-46 | 181 | 284 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-46 | 181 | 284 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in cellularized but not uncellularized female gametophytes. {ECO:0000269|PubMed:16214903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at high levels in the synergid cells of the female gametophyte, and at lower levels in the endosperm of young seeds and the trichomes of young leaves and sepals. {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00043861001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF176003 | 0.0 | AF176003.2 Arabidopsis thaliana putative transcription factor (MYB98) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013710783.1 | 0.0 | transcription factor MYB98 | ||||
Swissprot | Q9S7L2 | 0.0 | MYB98_ARATH; Transcription factor MYB98 | ||||
TrEMBL | A0A078JE25 | 0.0 | A0A078JE25_BRANA; BnaC07g50190D protein | ||||
STRING | Bo7g106240.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5869 | 28 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18770.1 | 0.0 | myb domain protein 98 |
Publications ? help Back to Top | |||
---|---|---|---|
|