PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00043627001

Common Name

GSBRNA2T00043627001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

CPP

Protein Properties

Length: 648aa MW: 71228.6 Da PI: 5.4535

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00043627001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.7	3.7e-16	360	398	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk GSBRNA2T00043627001 360 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKP 398 689**********************************96 PP
2	TCR	52.6	9e-17	445	483	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN GSBRNA2T00043627001 445 RHKRGCNCKKSNCLKKYCECFQGGVGCSINCRCEGCKNA 483 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.3E-19	359	400	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.245	360	485	IPR005172	CRC domain
Pfam	PF03638	6.1E-12	362	397	IPR005172	CRC domain
SMART	SM01114	2.1E-17	445	486	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	3.8E-12	447	483	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 648 aa Download sequence Send to blast
MDTPQKSITQ IETPVSKSRF EDSPVFNYIN SLSPIRPVKS IPNPHQFSTL NFTSPPSVFT 60 SPHLTSSHKE SRFFKTHHPS PDPTILVQES PDDSKSNEES AAEADATTEF NIDASTEMEQ 120 PQIVKYDVKE TNLDETTDLS LVPYASPPRE DNGEDAPGME MHDNVQGKNE TPDWDRLIAD 180 SSEFLIFSSP NDSEAFRCLM MQRASPSQAP SVMMPTMQPG SINEPESSNA SPYGAVSVLH 240 RGIRRRCLDF EMPGNKQTSS ENNTAACGSS SRCVVPSIGL HLNALLMSTK DCKTNNTTHD 300 YSCSEKYQVG LQGSSSTLQE TLDQTETETR EDVTVEPTLE ELHLSSPKKK RQLEAGEGES 360 CKRCNCKKSK CLKLYCECFA AGVYCIEPCS CIDCFNKPIH EDTVLATRKQ IESRNPLAFA 420 PKVIKSSDLV LETGDDASKT PASARHKRGC NCKKSNCLKK YCECFQGGVG CSINCRCEGC 480 KNAFGRKDGS AIVDMEAEQE EENETSGKNR RAKNQENTEV YLMRKEESSA LPATPMSVYR 540 QQLVQLKNMM PPPQSVLGGG SSSSGMFNSQ YTRKPEMKSL ETVAEDGAEE MPEILSHSSI 600 DNINAVSPNG KRVSPPHMDS SSSGRRSGGR KLILQSIPTF PSLTPQH*

Sequence ? help Back to Top

Protein Sequence Length: 648 aa Download sequence Send to blast

MDTPQKSITQ IETPVSKSRF EDSPVFNYIN SLSPIRPVKS IPNPHQFSTL NFTSPPSVFT  60
SPHLTSSHKE SRFFKTHHPS PDPTILVQES PDDSKSNEES AAEADATTEF NIDASTEMEQ  120
PQIVKYDVKE TNLDETTDLS LVPYASPPRE DNGEDAPGME MHDNVQGKNE TPDWDRLIAD  180
SSEFLIFSSP NDSEAFRCLM MQRASPSQAP SVMMPTMQPG SINEPESSNA SPYGAVSVLH  240
RGIRRRCLDF EMPGNKQTSS ENNTAACGSS SRCVVPSIGL HLNALLMSTK DCKTNNTTHD  300
YSCSEKYQVG LQGSSSTLQE TLDQTETETR EDVTVEPTLE ELHLSSPKKK RQLEAGEGES  360
CKRCNCKKSK CLKLYCECFA AGVYCIEPCS CIDCFNKPIH EDTVLATRKQ IESRNPLAFA  420
PKVIKSSDLV LETGDDASKT PASARHKRGC NCKKSNCLKK YCECFQGGVG CSINCRCEGC  480
KNAFGRKDGS AIVDMEAEQE EENETSGKNR RAKNQENTEV YLMRKEESSA LPATPMSVYR  540
QQLVQLKNMM PPPQSVLGGG SSSSGMFNSQ YTRKPEMKSL ETVAEDGAEE MPEILSHSSI  600
DNINAVSPNG KRVSPPHMDS SSSGRRSGGR KLILQSIPTF PSLTPQH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-16	364	482	14	120	Protein lin-54 homolog
5fd3_B	1e-16	364	482	14	120	Protein lin-54 homolog
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed at the late stage of pollen development in tricellular and mature pollen. {ECO:0000269\|PubMed:18057042}.
Uniprot	TISSUE SPECIFICITY: Ubiquitous but expressed mostly in all the aerial organs with highest expression in flowers. {ECO:0000269\|PubMed:10769245, ECO:0000269\|PubMed:18057042}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00433	DAP	Transfer from AT4G14770	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00043627001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009148228.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 2
Swissprot	F4JIF5	0.0	TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBL	A0A078GTH9	0.0	A0A078GTH9_BRANA; BnaA01g18960D protein
STRING	Bra036900.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	0.0	TESMIN/TSO1-like CXC 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]