PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00043437001 | ||||||||
Common Name | GSBRNA2T00043437001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 789aa MW: 86680.8 Da PI: 7.1629 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.2 | 1.5e-18 | 295 | 394 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+l+ sd+++ grlvlpk +ae++ +++ e++ l+++d +g++W++++++ +++s++yvl+ G ++ L++gD+v+F++++ GSBRNA2T00043437001 295 FEKTLSASDAGRIGRLVLPKACAEAYfpPISQSEGIPLKIQDVRGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMMLQAGDTVTFSRVD 383 99**************************666678889***************9989999999***9.********************766 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +++l +++++ GSBRNA2T00043437001 384 -PGGKLIMGFRK 394 .77777777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.3E-29 | 292 | 397 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.06E-20 | 292 | 394 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.12E-24 | 293 | 394 | No hit | No description |
PROSITE profile | PS50863 | 10.814 | 295 | 396 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.9E-23 | 295 | 395 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-16 | 295 | 394 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.624 | 548 | 598 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 3.3E-9 | 554 | 595 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 789 aa Download sequence Send to blast |
MFQVKTGSKM CMNASCGSTS TVEWKKGWPL RSGALADLCF RCGSAYETSL FCETFHLDQS 60 GWRECYLCNK RLHCGCIASK LVVEFMDFGG VGCTTCTNCH QPNLNNRGEN PGLFSRLPMN 120 RQHTNGESGM NVGKADLFSQ PLVQGDDKRE EFMPHRGFSN LMKPDNATTT GYRHDANGTH 180 ESSSTPSQPP SLNMPMAALP YSLNFATATK KLMDAASQSH TVQSSASGIL QTPSKSVPGT 240 PSGPGTSKSA QARIGRPPNE GRGRSHLLPR YWPKYTDKEL QQISGNLNLN IVPLFEKTLS 300 ASDAGRIGRL VLPKACAEAY FPPISQSEGI PLKIQDVRGK EWTFQFRFWP NNNSRMYVLE 360 GVTPCIQSMM LQAGDTVTFS RVDPGGKLIM GFRKAAHTGV IQVLLHSYLD PIFINRGVVL 420 PTDTSSSGVT ETPTSINASS CPAQTPEELK GLPEHLNSNH GGSSLKKSEV NGVKDKKRTR 480 TVGAKHKRML WRSEEAMEVR ITWEETQDLI SPSPGEKPTV VVIEEHEFEE FNEPPVFGKR 540 TIVTSRPSGE QERWGSCDDC SKWRRLPVDA LLPAKWTCSD NVWDESRCSC SAPEESLKEL 600 ENVLRMSKEY KKRRSGVSQT VRTEEELTGL DALASAAALG DTLGEEEEPA TTTRHPRHRV 660 GCSCIVCIQP PSGKGRHNSS CLCTVCSTVK RRFKTLMMRR KKKQLEREEI EAAATAADQE 720 NKEEGKIDLN SDPCNRGEVE AVGVEEKVES EKREAGECLG VAQADDVVGV TELEGEGEKV 780 GEESKSSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 3e-82 | 273 | 402 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 689 | 701 | KRRFKTLMMRRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.14877 | 0.0 | seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and at lower levels in roots, stems and leaves. {ECO:0000269|PubMed:15894743}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL2/HSL1. {ECO:0000269|PubMed:15894743, ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00043437001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353502 | 0.0 | AK353502.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-47-G20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013643593.1 | 0.0 | B3 domain-containing transcription repressor VAL1-like | ||||
Swissprot | Q8W4L5 | 0.0 | VAL1_ARATH; B3 domain-containing transcription repressor VAL1 | ||||
TrEMBL | A0A078GWV7 | 0.0 | A0A078GWV7_BRANA; BnaA04g17550D protein | ||||
STRING | Bra021635.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6923 | 24 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 0.0 | high-level expression of sugar-inducible gene 2 |