PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00043420001

Common Name

GSBRNA2T00043420001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 323aa MW: 36246.2 Da PI: 10.4904

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00043420001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.5	1.9e-30	256	314	3	60
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp ++++tYe eH h+k GSBRNA2T00043420001 256 DDYSWRKYGQKPIKGSPYPRGYYKCSSMrGCPARKHVERCVEDPAMLIVTYEAEHSHPK 314 99*********************9988**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	5.8E-16	211	252	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	8.1E-33	242	314	IPR003657	WRKY domain
PROSITE profile	PS50811	29.93	249	315	IPR003657	WRKY domain
SuperFamily	SSF118290	2.75E-26	252	314	IPR003657	WRKY domain
SMART	SM00774	2.6E-36	254	314	IPR003657	WRKY domain
Pfam	PF03106	5.2E-26	256	313	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MEEIEGTNRA AVESCHRVLN LLHQLDHGRS LVSETREAVS RFKRVGSLLS KSVGHARFRR 60 ANKKPLTHLS QTIFLDPCLL QTTQLPESSQ KLRSGFHELS LRPNDSLTLG TRSFSLKAPP 120 LLQLNQQQQQ QQLQAHHLHQ QQQQRHHQAE IMLRKCSGGI SLSFDNSSCT PTMSSTRSFV 180 SSLSIDGSVA NAEGRNSFHV VGDQSLLPHS KRKCLLKGDE HGSSSRCHCS KKRKHRVRRS 240 IRVPAISNKV ADIPPDDYSW RKYGQKPIKG SPYPRGYYKC SSMRGCPARK HVERCVEDPA 300 MLIVTYEAEH SHPKLPSQAV TT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-20	242	317	2	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00043420001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid. {ECO:0000269\|PubMed:11449049}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022543336.1	0.0	probable WRKY transcription factor 21 isoform X2
Swissprot	O04336	1e-164	WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBL	A0A078GYJ1	0.0	A0A078GYJ1_BRANA; BnaA04g17690D protein
STRING	Bra021652.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3567	28	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30590.1	7e-92	WRKY DNA-binding protein 21

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]