PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00043362001
Common NameGSBRNA2T00043362001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family RAV
Protein Properties Length: 345aa    MW: 39290.3 Da    PI: 8.3062
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00043362001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.62.3e-113986154
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                         ++ykGV +   +g W A+I+       +kr++lg+f +a eAa+a++ a  kl+
  GSBRNA2T00043362001 39 TKYKGVVQQQ-NGHWGAQIYAD-----HKRIWLGTFKSAAEAAAAYDSASIKLR 86
                         69****9888.8******9993.....4*********************99997 PP
2B392.72.7e-29171271189
                          EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                          f k+ltpsdv+k++rlv+pkk+a +h            g    e+++++++d+  r+W+++++y+k+s+++v+t+GW++Fvk+++Lke+D
  GSBRNA2T00043362001 171 FHKELTPSDVGKLNRLVIPKKHAVKHlpfiserdegetG-GAVEDVEVVFYDRAMRQWKFRYCYWKSSQSFVFTRGWNGFVKEKNLKEKD 259
                          89****************************999887752.334999******************************************** PP

                          EEEEEE-SS.SE CS
                   B3  79 fvvFkldgr.se 89 
                          ++vF+  +  s+
  GSBRNA2T00043362001 260 VIVFYTCDVpSN 271
                          *****6554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.69E-123999No hitNo description
PROSITE profilePS5103217.2274097IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-164097IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-144099IPR016177DNA-binding domain
SMARTSM003803.7E-1640103IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.0E-32166265IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-28169266IPR015300DNA-binding pseudobarrel domain
CDDcd100176.28E-26170273No hitNo description
PfamPF023621.5E-26171272IPR003340B3 DNA binding domain
PROSITE profilePS5086312.266171280IPR003340B3 DNA binding domain
SMARTSM010192.7E-21171278IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDSLKETSHE ANTTTDTSVS SDLRLAKRMK PTVSPTATTK YKGVVQQQNG HWGAQIYADH  60
KRIWLGTFKS AAEAAAAYDS ASIKLRSFDA NSHRNFPWSE ITVHEPDFQK SHTTEAVLNM  120
IRESSYQQKF SDYLIVRSQM VAIANINIVG SKQRRGGGEE STKCFSCTEL FHKELTPSDV  180
GKLNRLVIPK KHAVKHLPFI SERDEGETGG AVEDVEVVFY DRAMRQWKFR YCYWKSSQSF  240
VFTRGWNGFV KEKNLKEKDV IVFYTCDVPS NFKTLEGQSN KFLMIDVDYF TDKGSVEPKE  300
VNEMVHNVSE REMKTENFFG TKVEEETKSE VSKGGFMLFG VRIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2617026313100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00043362001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022564918.10.0AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6880.0RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A078GT350.0A0A078GT35_BRANA; BnaA05g15500D protein
TrEMBLA0A397ZJK40.0A0A397ZJK4_BRACM; Uncharacterized protein
STRINGBra030458.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-171RAV family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]