PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00043279001
Common NameGSBRNA2T00043279001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 233aa    MW: 25267.1 Da    PI: 8.8512
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00043279001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.21.2e-282103197
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++ C+l+p++     +++q +++ +v+k+FG++ ++ +++a+pe +r+++++sl++eA+ r+ +Pv+Ga+g++ ++++
  GSBRNA2T00043279001   2 SCNGCRVLRKGCSETCILRPCLqwiesAESQGHATLFVAKFFGRAGLMTFISAVPELNRPALFQSLLFEACGRTVNPVNGAAGLLGSGNW 91 
                          6*********************9999777889********************************************************** PP

               DUF260  86 qleqlkaelall 97 
                          +++q+++e++l+
  GSBRNA2T00043279001  92 HVCQAAVETVLR 103
                          ******998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.8721107IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-232101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATLFVA KFFGRAGLMT FISAVPELNR  60
PALFQSLLFE ACGRTVNPVN GAAGLLGSGN WHVCQAAVET VLRGGTLRPI SDLLPSPSLI  120
SSNDSTVICT DIGRFSTSRT KLSTSDMKEP PVNRRRSKTE RSESVIDVQL NHRLDLTIPV  180
VPVPLLPPTP FRKVVNGERP GSPSEESVTT SCSENGIIGY NKRERKLLNL FV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.233121e-150seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00043279001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738741e-118AB473874.1 Arabidopsis thaliana ASL41 mRNA for ASYMMETRIC LEAVES2-like 41 protein, complete cds.
GenBankAY0721441e-118AY072144.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
GenBankAY1229761e-118AY122976.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138496.11e-168PREDICTED: LOB domain-containing protein 39-like
RefseqXP_013728972.11e-168LOB domain-containing protein 39-like
SwissprotQ9SZE81e-117LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A078GWR21e-168A0A078GWR2_BRANA; BnaA03g54090D protein
STRINGBra017831.1-P1e-168(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.13e-97LOB domain-containing protein 39
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]