PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00043209001

Common Name

GSBRNA2T00043209001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 815aa MW: 91052.3 Da PI: 5.7615

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00043209001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.2e-29	533	583	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ GSBRNA2T00043209001 533 DKTITLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKV 583 689**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.166	520	603	IPR003035	RWP-RK domain
Pfam	PF02042	1.8E-25	535	583	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.36E-22	707	802	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.9E-21	713	794	No hit	No description
SMART	SM00666	4.9E-26	714	797	IPR000270	PB1 domain
PROSITE profile	PS51745	28.812	714	797	IPR000270	PB1 domain
Pfam	PF00564	1.8E-18	715	796	IPR000270	PB1 domain
CDD	cd06407	1.64E-43	716	796	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 815 aa Download sequence Send to blast
MEDSFLQTQN AVMDTEFMDG LLLDGCWLET TDGSEFLNLP PSTPFDPSSF MWSPPTQDTS 60 AICTSGVVSQ TYGQDCADEF QWNKRWWIGP GGGGGSSVTE RLVQAVEHIK DYTTERGSLI 120 QLWVPVNRGG KRVLTTKEQP FSHDPMCQRL ANYREISVNY HFSAEQDDSK ALAGLPGRVF 180 LGKLPEWTPD VRFFKSEEYP RVQHAQDCDV RGTLAIPVFE QGSKICLGVI EVVMTTEMVK 240 LKPELESICR ALQAVDLRST ELPVPPSLKG CDLSYKAALP EIRNLLRCAC ETHKLPLAQT 300 WVSCLQQNKS GCRHNDENYI HCVSTIDDAC YLGDPTVREF QEACSEHHLL KGQGVAGQAF 360 LTNGPCFSPD VSNYKKSEYP LSHHANMFGL HGAVAIRLRC IHTGDADFVL EFFLPKDCDN 420 MEEQRRMLNA LSTIMAHVPR SLRTVTDKEL EEESEVVERE EVVTPKIENT SELHHSNPQN 480 LGLVFDGGDK LPNDGFGLKR GYDYTRESNI NESNTFTSGG FNSMAEKKRT KADKTITLDV 540 LRQYFAGSLK DAAKSIGVCP TTLKRICRQH GIQRWPSRKI KKVGHSLQKI QRVIDSVEGV 600 SGPLPIGSFY ANFPNLASQE PSQQPKTSPP PPPLQLSKSP VSQYSHSSSS SQCCSSETQL 660 NSSATAHPSQ GDTFKKVSSE VDLQSSVLTL SSLENIPQGQ GTHLLSSSSQ DDDSLRIKVS 720 YGEENIRFRM KNSRRLSDLQ WEIGKRFSIE DMSRYDLKYL DEDNEWVLLT CDEDVEECVD 780 VCRTTPSHTI KLLLHASSHH FPERSSPTGY TLWQ*

Sequence ? help Back to Top

Protein Sequence Length: 815 aa Download sequence Send to blast

MEDSFLQTQN AVMDTEFMDG LLLDGCWLET TDGSEFLNLP PSTPFDPSSF MWSPPTQDTS  60
AICTSGVVSQ TYGQDCADEF QWNKRWWIGP GGGGGSSVTE RLVQAVEHIK DYTTERGSLI  120
QLWVPVNRGG KRVLTTKEQP FSHDPMCQRL ANYREISVNY HFSAEQDDSK ALAGLPGRVF  180
LGKLPEWTPD VRFFKSEEYP RVQHAQDCDV RGTLAIPVFE QGSKICLGVI EVVMTTEMVK  240
LKPELESICR ALQAVDLRST ELPVPPSLKG CDLSYKAALP EIRNLLRCAC ETHKLPLAQT  300
WVSCLQQNKS GCRHNDENYI HCVSTIDDAC YLGDPTVREF QEACSEHHLL KGQGVAGQAF  360
LTNGPCFSPD VSNYKKSEYP LSHHANMFGL HGAVAIRLRC IHTGDADFVL EFFLPKDCDN  420
MEEQRRMLNA LSTIMAHVPR SLRTVTDKEL EEESEVVERE EVVTPKIENT SELHHSNPQN  480
LGLVFDGGDK LPNDGFGLKR GYDYTRESNI NESNTFTSGG FNSMAEKKRT KADKTITLDV  540
LRQYFAGSLK DAAKSIGVCP TTLKRICRQH GIQRWPSRKI KKVGHSLQKI QRVIDSVEGV  600
SGPLPIGSFY ANFPNLASQE PSQQPKTSPP PPPLQLSKSP VSQYSHSSSS SQCCSSETQL  660
NSSATAHPSQ GDTFKKVSSE VDLQSSVLTL SSLENIPQGQ GTHLLSSSSQ DDDSLRIKVS  720
YGEENIRFRM KNSRRLSDLQ WEIGKRFSIE DMSRYDLKYL DEDNEWVLLT CDEDVEECVD  780
VCRTTPSHTI KLLLHASSHH FPERSSPTGY TLWQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00043209001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189247	0.0	AC189247.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB018K09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022543047.1	0.0	protein NLP4
Refseq	XP_022543048.1	0.0	protein NLP4
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	A0A078GVK0	0.0	A0A078GVK0_BRANA; BnaA06g14540D protein
TrEMBL	A0A3P5YZ42	0.0	A0A3P5YZ42_BRACM; Uncharacterized protein
STRING	Bra025834.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3461	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]