PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00043065001

Common Name

GSBRNA2T00043065001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 462aa MW: 50260.6 Da PI: 6.827

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00043065001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.3	8.5e-06	352	390	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ ++++ L++l+ + +K + a++L +A+eYIk L GSBRNA2T00043065001 352 VRKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 390 5778999*********98.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.735	341	390	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0075	347	396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.66E-11	351	405	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.14E-6	351	395	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.2E-10	355	399	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence Send to blast
MGDHHDFINS GSWWKVSSSS SISSSSSMRA NSNESGGTAV FHDKLHHQDH HSLATDHHLQ 60 MIGLGLSSQS PVDQWNQSLL RGDSKAETNF GVMLQENLNL DATSNANANT TSSTTSYQLQ 120 ESDSSHHQAL WRDPHINNND FKPQLNMTSS NRGFFSDHHQ FSPHGSSSTD SSTVTCQGFS 180 IDNSTNTMYG TSTTPNSSSA MFHQHQGAGY NLPGSSEQQL SRNHQQSNLG YSQFGSSTGN 240 YDQIATALPS TWFLRSSPPK PHSPLRFSNN ATFWNPAATA GNVGPTQHDA SSNFLPAIRP 300 PQLHRPSFEE QPKSVSEIRD SSSSDVKRGG GDQPAAKRAK SEAASPSPAF KVRKEKMGDR 360 IAALQQLVSP FGKTDAASVL SEAIEYIKFL HQQVSALSNP YMKSGASLQH QQSDHPKELD 420 VSEEPDLRSR GLCLVPVSST FPVTHDTTVD FWTPTFGGTF R*

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence Send to blast

MGDHHDFINS GSWWKVSSSS SISSSSSMRA NSNESGGTAV FHDKLHHQDH HSLATDHHLQ  60
MIGLGLSSQS PVDQWNQSLL RGDSKAETNF GVMLQENLNL DATSNANANT TSSTTSYQLQ  120
ESDSSHHQAL WRDPHINNND FKPQLNMTSS NRGFFSDHHQ FSPHGSSSTD SSTVTCQGFS  180
IDNSTNTMYG TSTTPNSSSA MFHQHQGAGY NLPGSSEQQL SRNHQQSNLG YSQFGSSTGN  240
YDQIATALPS TWFLRSSPPK PHSPLRFSNN ATFWNPAATA GNVGPTQHDA SSNFLPAIRP  300
PQLHRPSFEE QPKSVSEIRD SSSSDVKRGG GDQPAAKRAK SEAASPSPAF KVRKEKMGDR  360
IAALQQLVSP FGKTDAASVL SEAIEYIKFL HQQVSALSNP YMKSGASLQH QQSDHPKELD  420
VSEEPDLRSR GLCLVPVSST FPVTHDTTVD FWTPTFGGTF R*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00043065001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118054	0.0	AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14.
GenBank	BT008580	0.0	BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013614574.1	0.0	PREDICTED: transcription factor bHLH123-like isoform X1
Swissprot	Q8GXT3	0.0	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A078GXW8	0.0	A0A078GXW8_BRANA; BnaC05g32220D protein
STRING	Bo01052s010.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4024	25	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]