PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00042974001
Common NameGSBRNA2T00042974001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 402aa    MW: 43183 Da    PI: 4.8077
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00042974001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.5e-07352374426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          ++C++f  +  C+ G++C F H+
  GSBRNA2T00042974001 352 KPCMYFNTSRGCRNGANCLFQHD 374
                          69********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.324348376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4352375IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-4352374IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6353381IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MFFFGVLSFL FEVRLFISED SPSQVGSESQ DHFQAKSSGA AHLSDDNLPP GFGGMLSPNE  60
SQIKLSDIPV IKWNCSNRTL LDDEWRMVAG DESKEAEAQN QRELRVLEAF YPGASSIPPN  120
PSVPADVDTS DYDDQQTLVI PILVVEDDDV ATDTASELPT QSGVDVQSIT NENTSTSSSL  180
PAASEIMAAL SALSNSKEQG GSMIDKDLLI KILSNPKMVE NLVTNCGSSA GSVSSNASHE  240
AKGVVATATT PACSNGQYNP QPAVAHIPPP MVYLPPARSN QSNYGAPPPP AKDASYYKSL  300
IQQHGGERQE APPPPVQHLG GYRYSQPGAG GGGPNPEIVS NRPRDSKPKI MKPCMYFNTS  360
RGCRNGANCL FQHDATAAYQ PRNINNNPEM QRAKRMRFDR V*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.282870.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00042974001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013641922.10.0zinc finger CCCH domain-containing protein 6-like
RefseqXP_013641925.10.0zinc finger CCCH domain-containing protein 6-like
SwissprotQ56XU40.0C3H6_ARATH; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A078GV360.0A0A078GV36_BRANA; BnaA06g14050D protein
STRINGBra025776.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56141418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02560.25e-06HB-other family protein
Publications ? help Back to Top
  1. Mastrangelo AM, et al.
    Low temperature promotes intron retention in two e-cor genes of durum wheat.
    Planta, 2005. 221(5): p. 705-15
    [PMID:15666155]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]