PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00042970001 | ||||||||
Common Name | GSBRNA2T00042970001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 249aa MW: 28404.7 Da PI: 7.588 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.6 | 5.5e-14 | 96 | 163 | 19 | 81 |
-HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 19 pkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 p ++a+e+ + + + +++l+ + ++ ++W++++i+r++++r++l++GW+ Fv++++L +gD ++ GSBRNA2T00042970001 96 PSRHADEClppldmSRQ-PPTQELVAKKLHANEWRFRHIFRGQQRRHLLQSGWSVFVSSKRLVAGDAFI 163 56677777777775333.33459*******************************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.002 | 88 | 183 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.98E-18 | 96 | 163 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-21 | 96 | 163 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.21E-10 | 96 | 178 | No hit | No description |
Pfam | PF02362 | 1.1E-11 | 96 | 163 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MLFQLRFSAE ITQSNRSVGA ERVVDPEAAL YKELWHACAG PLVTGHIEQV EASKNQAGGT 60 VGFTFVCGAY AQITLFLEPI QDENAIEKEA PLPPPPSRHA DECLPPLDMS RQPPTQELVA 120 KKLHANEWRF RHIFRGQQRR HLLQSGWSVF VSSKRLVAGD AFISLSFVGF WGENGELRKC 180 EKKAHRLQRE QFPLLCFFTR SVEIIYDAIL HMVAQKHFHE LIEIQWYLQM MCEKQLKLQD 240 TRSSSSMP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 3e-42 | 11 | 204 | 1 | 244 | Auxin response factor 1 |
4ldy_B | 3e-42 | 11 | 204 | 1 | 244 | Auxin response factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. Expressed in developing siliques. {ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078, ECO:0000269|PubMed:15960614}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00042970001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353097 | 8e-68 | AK353097.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-O23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001330603.1 | 3e-70 | auxin response factor 2 | ||||
Refseq | NP_201006.2 | 3e-70 | auxin response factor 2 | ||||
Refseq | NP_851244.1 | 3e-70 | auxin response factor 2 | ||||
Refseq | NP_974980.1 | 3e-70 | auxin response factor 2 | ||||
Refseq | XP_013645688.1 | 3e-70 | auxin response factor 2 | ||||
Swissprot | Q94JM3 | 3e-71 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A078GW85 | 0.0 | A0A078GW85_BRANA; BnaA06g14090D protein | ||||
STRING | AT5G62000.1 | 1e-69 | (Arabidopsis thaliana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 1e-73 | auxin response factor 2 |