PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00042551001
Common NameGSBRNA2T00042551001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 288aa    MW: 32379.3 Da    PI: 5.0084
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00042551001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-20146196255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g++++eIrdp+++g   r++lg+f+ta eAa+a+++a+ +l+g
  GSBRNA2T00042551001 146 HYRGVRQRP-WGKFASEIRDPNKRG--SRIWLGTFDTAIEAARAYDEAAFRLRG 196
                          7********.**********96655..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.8E-33145205IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-22146206IPR016177DNA-binding domain
PfamPF008474.9E-14146196IPR001471AP2/ERF domain
CDDcd000181.59E-32146204No hitNo description
SMARTSM003802.1E-37146210IPR001471AP2/ERF domain
PROSITE profilePS5103224.026146204IPR001471AP2/ERF domain
PRINTSPR003671.1E-10147158IPR001471AP2/ERF domain
PRINTSPR003671.1E-10170186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MANPSEVSSA LWFIEKHLLD VVSPVAKDCW MVHESAANES SSDSSPMIFG PSSEIKPEII  60
DLSTPRFMDL ISNVSVSDFD FKPTFQTGNQ FEPEFKTQTP CASDDSHSNR KPPLKISVPT  120
KTEWIQFNPQ PEVTKPVQPD AEEQRHYRGV RQRPWGKFAS EIRDPNKRGS RIWLGTFDTA  180
IEAARAYDEA AFRLRGSKAI LNFPLEVGKW KSRSNADGEK KRKREENDDE DVAVVEKALK  240
TEQSVDGKEA FNLTEFCEWD VTGLLNFPLL SPLSPHPSFG YSQLTVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-30145207163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-30145207466ATERF1
3gcc_A6e-30145207466ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.248681e-126root
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00042551001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892610.0AC189261.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021P11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013693808.10.0ethylene-responsive transcription factor 5-like
SwissprotO803411e-127EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A078JGZ10.0A0A078JGZ1_BRANA; BnaA06g40170D protein
STRINGBra024953.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-92ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]