PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00042526001 | ||||||||
Common Name | GSBRNA2T00042526001, LOC106419492 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 284aa MW: 32217.6 Da PI: 8.6924 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 182.3 | 1.2e-56 | 17 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+++yL+kkv + ++++ ++i+evd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdk GSBRNA2T00042526001 17 LPPGFRFHPTDEELITHYLHKKVLNIDFSA-KAISEVDLNKAEPWELPYKAKMGEKEWYFFCVRDRKYPTGLRTNRATQAGYWKATGKDK 105 79**************************99.88***************99999************************************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 e+++ +++lvg+kktLvfykgrapkg+kt+Wvmhe+rl GSBRNA2T00042526001 106 EIFR-GKSLVGMKKTLVFYKGRAPKGHKTNWVMHEFRL 142 ****.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-63 | 13 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.486 | 17 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-29 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
METIGGFHKE DDEQMDLPPG FRFHPTDEEL ITHYLHKKVL NIDFSAKAIS EVDLNKAEPW 60 ELPYKAKMGE KEWYFFCVRD RKYPTGLRTN RATQAGYWKA TGKDKEIFRG KSLVGMKKTL 120 VFYKGRAPKG HKTNWVMHEF RLDGKLSAYN LPKTAKNEWV ISRVFHKTEG GKKIPLSALI 180 QIGSYGGSNL PPITDSSPYN DITKTEPVYV PCFSNQTETR GTLLSYFSNS ALCSIPLYQP 240 QSLQVFENLQ STHQILTQEH SVSHQEVPSS SAGPIDLESF LSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-55 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-55 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-55 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-55 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-55 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-55 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-55 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-55 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.27191 | 0.0 | seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in leaves. {ECO:0000269|PubMed:17098808}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00042526001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC966757 | 0.0 | KC966757.1 Brassica napus NAC transcription factor 79 (NAC79.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013715746.1 | 0.0 | NAC domain-containing protein 79 | ||||
Swissprot | Q9FLR3 | 1e-169 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | A0A078JGW7 | 0.0 | A0A078JGW7_BRANA; BnaA10g30260D protein | ||||
TrEMBL | A0A397XXZ2 | 0.0 | A0A397XXZ2_BRACM; Uncharacterized protein | ||||
STRING | Bra009246.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM400 | 28 | 174 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.1 | 1e-172 | NAC domain containing protein 80 |
Link Out ? help Back to Top | |
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Entrez Gene | 106419492 |
Publications ? help Back to Top | |||
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