PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00042526001
Common NameGSBRNA2T00042526001, LOC106419492
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 284aa    MW: 32217.6 Da    PI: 8.6924
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00042526001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.31.2e-56171421128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL+kkv + ++++ ++i+evd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdk
  GSBRNA2T00042526001  17 LPPGFRFHPTDEELITHYLHKKVLNIDFSA-KAISEVDLNKAEPWELPYKAKMGEKEWYFFCVRDRKYPTGLRTNRATQAGYWKATGKDK 105
                          79**************************99.88***************99999************************************* PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e+++ +++lvg+kktLvfykgrapkg+kt+Wvmhe+rl
  GSBRNA2T00042526001 106 EIFR-GKSLVGMKKTLVFYKGRAPKGHKTNWVMHEFRL 142
                          ****.999****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-6313167IPR003441NAC domain
PROSITE profilePS5100558.48617167IPR003441NAC domain
PfamPF023652.3E-2918142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
METIGGFHKE DDEQMDLPPG FRFHPTDEEL ITHYLHKKVL NIDFSAKAIS EVDLNKAEPW  60
ELPYKAKMGE KEWYFFCVRD RKYPTGLRTN RATQAGYWKA TGKDKEIFRG KSLVGMKKTL  120
VFYKGRAPKG HKTNWVMHEF RLDGKLSAYN LPKTAKNEWV ISRVFHKTEG GKKIPLSALI  180
QIGSYGGSNL PPITDSSPYN DITKTEPVYV PCFSNQTETR GTLLSYFSNS ALCSIPLYQP  240
QSLQVFENLQ STHQILTQEH SVSHQEVPSS SAGPIDLESF LSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-551417317174NAC domain-containing protein 19
3swm_B1e-551417317174NAC domain-containing protein 19
3swm_C1e-551417317174NAC domain-containing protein 19
3swm_D1e-551417317174NAC domain-containing protein 19
3swp_A1e-551417317174NAC domain-containing protein 19
3swp_B1e-551417317174NAC domain-containing protein 19
3swp_C1e-551417317174NAC domain-containing protein 19
3swp_D1e-551417317174NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.271910.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in leaves. {ECO:0000269|PubMed:17098808}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00042526001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667570.0KC966757.1 Brassica napus NAC transcription factor 79 (NAC79.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013715746.10.0NAC domain-containing protein 79
SwissprotQ9FLR31e-169NAC79_ARATH; NAC domain-containing protein 79
TrEMBLA0A078JGW70.0A0A078JGW7_BRANA; BnaA10g30260D protein
TrEMBLA0A397XXZ20.0A0A397XXZ2_BRACM; Uncharacterized protein
STRINGBra009246.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.11e-172NAC domain containing protein 80
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Vidal EA,Álvarez JM,Gutiérrez RA
    Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
    Plant Signal Behav, 2014. 9(3): p. e28501
    [PMID:24642706]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  5. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]