PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00042445001 | ||||||||
Common Name | GSBRNA2T00042445001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 324aa MW: 35969.4 Da PI: 9.1331 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.8 | 4.8e-38 | 80 | 140 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++++cprC++tntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+ss GSBRNA2T00042445001 80 PQEKVNCPRCNATNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSS 140 6899******************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-30 | 79 | 138 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.3E-32 | 82 | 138 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.425 | 84 | 138 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 86 | 122 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MDATKWTHDF QEMINVKPME QIISNTSNNT SQQQQQQQQQ QQTFIATTAR PNPNASNGGS 60 GAGNDNNTAT TMESTRKARP QEKVNCPRCN ATNTKFCYYN NYSLTQPRYF CKGCRRYWTE 120 GGSLRNVPVG GSSRKNKRSS TPLASPSNPK LPDLNPPFFF ATQIPNKSSK DLNLLSFPVM 180 QDHHHGMSQF LHMPKVENNN TSSSIYASSS HGASSRGMNT LLPGQMMDSN SVLYSSLGIP 240 TMADYKQSNN NLSFSIDHHQ GIGHNTINNN HRAEDNNHAD DMNGASRVLF PFSDTKEFSS 300 TNQEKSHNTY WSGMFSNTGG SSW* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.14494 | 2e-69 | seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the phloem of the mother plant, including in roots, stem, leaves and flowers, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00042445001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979481 | 1e-175 | JN979481.1 Brassica rapa subsp. pekinensis auxin response factor 18-1 (ARF18-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013741906.1 | 0.0 | dof zinc finger protein DOF3.7 isoform X1 | ||||
Swissprot | Q43385 | 1e-171 | DOF37_ARATH; Dof zinc finger protein DOF3.7 | ||||
TrEMBL | A0A078JGP6 | 0.0 | A0A078JGP6_BRANA; BnaCnng44400D protein | ||||
STRING | Bo4g100110.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2528 | 26 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.4 | 1e-165 | Dof family protein |
Publications ? help Back to Top | |||
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