PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00042036001

Common Name

GSBRNA2T00042036001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 375aa MW: 42312.9 Da PI: 9.6331

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00042036001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21.8	4e-07	243	279	17	53
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 A+rsR RK+++i eLe+ v++L+ae ++ l+ l+ GSBRNA2T00042036001 243 AQRSRVRKLQYISELERTVQALQAEGSKVSADLDFLN 279 89***********************988777777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.9E-5	227	302	No hit	No description
CDD	cd14703	2.67E-14	235	282	No hit	No description
SuperFamily	SSF57959	2.56E-5	243	285	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MASSKGTQSV KDLMHPGKNA LLPPKIPFPT VSAPYSEYIP LGSRHHGHKL NDEKPHHHHH 60 HQRTSSESDL VEEPPFWLDD LLNEPESPVR KCGHRRSSSD SYAYLDMANA KNISLTLQND 120 FSYRNTGSST QRGGVHELDW NQNAQGAAFY SDSNFLKQTN RQRDSLVVAS GPRPSWQPFT 180 RESVGGKHMG SSSYMPQEAP ETKNYAKTLS HDAKKFSPEQ KNSNAQPVTC DADNTRRAKQ 240 QFAQRSRVRK LQYISELERT VQALQAEGSK VSADLDFLNQ RNLILSMENK ALKQRLESIA 300 QEKLIKQMEQ ELLEKEIGRL RALYQQQQQT QQPPASHKRA SSKDLDSQFS SLSLNSKDSN 360 SSRDSVSVTS QFHF*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MASSKGTQSV KDLMHPGKNA LLPPKIPFPT VSAPYSEYIP LGSRHHGHKL NDEKPHHHHH  60
HQRTSSESDL VEEPPFWLDD LLNEPESPVR KCGHRRSSSD SYAYLDMANA KNISLTLQND  120
FSYRNTGSST QRGGVHELDW NQNAQGAAFY SDSNFLKQTN RQRDSLVVAS GPRPSWQPFT  180
RESVGGKHMG SSSYMPQEAP ETKNYAKTLS HDAKKFSPEQ KNSNAQPVTC DADNTRRAKQ  240
QFAQRSRVRK LQYISELERT VQALQAEGSK VSADLDFLNQ RNLILSMENK ALKQRLESIA  300
QEKLIKQMEQ ELLEKEIGRL RALYQQQQQT QQPPASHKRA SSKDLDSQFS SLSLNSKDSN  360
SSRDSVSVTS QFHF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.10678	0.0	microspore-derived embryo\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00042036001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013661721.1	0.0	uncharacterized protein At4g06598
Refseq	XP_013661722.1	0.0	uncharacterized protein At4g06598
TrEMBL	A0A078GVJ8	0.0	A0A078GVJ8_BRANA; BnaC09g15590D protein
TrEMBL	A0A3P6EBH7	0.0	A0A3P6EBH7_BRAOL; Uncharacterized protein
STRING	Bo9g052080.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3360	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	1e-171	bZIP family protein

Link Out ? help Back to Top
Entrez Gene	106366611

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]