PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00041610001

Common Name

GSBRNA2T00041610001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 388aa MW: 44274.9 Da PI: 7.2419

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00041610001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	80.9	1.7e-25	286	369	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++ev+aLi+ r+e+ee+ + k++ W+e+s +m+ rg+ers+k+Ckekwen+nk+yk++ e++kk+ +e+++t +yf++le GSBRNA2T00041610001 286 RWPQEEVQALIASRSEVEEKTGVV-HKGAIWDEISTRMKGRGYERSAKKCKEKWENMNKYYKRVMESSKKQ-PEHTKTRSYFEKLE 369 8******************998.89**************************************95.9*********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	4.1E-4	283	344	IPR001005	SANT/Myb domain
Pfam	PF13837	2.0E-19	285	370	No hit	No description
SuperFamily	SSF46689	9.6E-5	285	354	IPR009057	Homeodomain-like
CDD	cd12203	8.05E-23	285	348	No hit	No description
PROSITE profile	PS50090	7.457	286	342	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	7.3E-5	286	342	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MELLAGNCRK RLADDDFAED VDPFGGSDWM YGGRSLRSQG NDDALATLAD LAPPPQKLKP 60 IRCVVNKASL EDRHPLDILA GSLDRLPEMG FLEDFDAPLG SKIADVEESG LLTRGVGKGL 120 RFETEVQGQI HDTSRDGVSL SPSFDSDSEG DSSQGVGKAV TGKRKRQSRE KREHFMEKLV 180 GKMMRRQEKL HNQLINVMEK MERERVRSEE AWRQQEMDRM KQNEEARREE MSRSSTLISF 240 IKSVIGEELK IPNAFVHAQP LQTIPRQCEW DQTQGDVKFV FPGGRRWPQE EVQALIASRS 300 EVEEKTGVVH KGAIWDEIST RMKGRGYERS AKKCKEKWEN MNKYYKRVME SSKKQPEHTK 360 TRSYFEKLES FYKTNSVSAE HSGEKEQ*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MELLAGNCRK RLADDDFAED VDPFGGSDWM YGGRSLRSQG NDDALATLAD LAPPPQKLKP  60
IRCVVNKASL EDRHPLDILA GSLDRLPEMG FLEDFDAPLG SKIADVEESG LLTRGVGKGL  120
RFETEVQGQI HDTSRDGVSL SPSFDSDSEG DSSQGVGKAV TGKRKRQSRE KREHFMEKLV  180
GKMMRRQEKL HNQLINVMEK MERERVRSEE AWRQQEMDRM KQNEEARREE MSRSSTLISF  240
IKSVIGEELK IPNAFVHAQP LQTIPRQCEW DQTQGDVKFV FPGGRRWPQE EVQALIASRS  300
EVEEKTGVVH KGAIWDEIST RMKGRGYERS AKKCKEKWEN MNKYYKRVME SSKKQPEHTK  360
TRSYFEKLES FYKTNSVSAE HSGEKEQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.9153	0.0	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00041610001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC183495	0.0	AC183495.1 Brassica oleracea Contig A, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009128990.1	0.0	PREDICTED: trihelix transcription factor GTL1
TrEMBL	A0A078GUU5	0.0	A0A078GUU5_BRANA; BnaA02g25620D protein
STRING	Bra022149.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9411	27	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	1e-144	Trihelix family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]