PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00041485001
Common NameGSBRNA2T00041485001, LOC106418874
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRF
Protein Properties Length: 348aa    MW: 37982.6 Da    PI: 8.4423
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00041485001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.94.2e-24105147244
                  WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                           epgrCrRtDGKkWRCs++v++++k+CErHlhrgr rsrk++e
  GSBRNA2T00041485001 105 LEPGRCRRTDGKKWRCSKEVVSNHKYCERHLHRGRPRSRKHVE 147
                          69***************************************97 PP
2QLQ51.23.9e-185687233
                  QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33
                         +FT+aQl +L++Q+++yKy++a+ PvP +Ll+
  GSBRNA2T00041485001 56 PFTNAQLKELERQAMIYKYMIASIPVPFDLLV 87
                         9*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.1E-105591IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.4E-115686IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.1865691IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.629104148IPR014977WRC domain
PfamPF088791.7E-19106147IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDFLKVSDKT TTPYRNNSLF GLSQQHMEIH PHPHPHPHVI TPHAGNGVMG CYYYYPFTNA  60
QLKELERQAM IYKYMIASIP VPFDLLVSSS SYAPPCNNKN AVGDLEPGRC RRTDGKKWRC  120
SKEVVSNHKY CERHLHRGRP RSRKHVELPY SRPIDIGGGS EKNRVLSSIK DTTVVEPKEV  180
SSALANYRGL EIFPASASNE QENKYLNFID VWSDGVRSSE KQSTPASSSP NGNPSLYSLD  240
LSMGGNSLMG HDEMGLRVIG PGRDDPHGYG PYGGVVSSSL DEMSRWLAST SATPGGPLAE  300
ILRPNPSSAF SGEMEGNSLT ATPTPSSSPS RVVKKVTGSV SDDSSKI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.175000.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00041485001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0154761e-100AB015476.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNC6.
GenBankAB4937911e-100AB493791.1 Arabidopsis thaliana At5g53660 mRNA for hypothetical protein, partial cds, clone: RAAt5g53660.
GenBankAK1761091e-100AK176109.1 Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL22-89-N21.
GenBankBT0108821e-100BT010882.1 Arabidopsis thaliana At5g53660 gene, complete cds.
GenBankCP0026881e-100CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013715070.10.0growth-regulating factor 7
SwissprotQ9FJB81e-173GRF7_ARATH; Growth-regulating factor 7
TrEMBLA0A078GVZ80.0A0A078GVZ8_BRANA; BnaA02g10150D protein
STRINGBra022667.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121062731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.11e-151growth-regulating factor 7
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]