PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00041455001 | ||||||||
Common Name | GSBRNA2T00041455001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 157aa MW: 18034.2 Da PI: 8.4935 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.4 | 5.1e-18 | 9 | 64 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r k+ ++t++q+++Le++F n+++ + + +L++ lgL++rqV vWFqN+Ra+ k GSBRNA2T00041455001 9 RNKKKRLTQDQVRQLEKCFTLNNKLEPDLKLQLSNTLGLPQRQVAVWFQNKRARSK 64 567889************************************************99 PP | |||||||
2 | HD-ZIP_I/II | 103.1 | 2.4e-33 | 10 | 102 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+++qv++LE++F+ ++kLep+ K +l+++Lgl +rqvavWFqn+RAR kt+ lE +y+ L+++++a+ +++++Le++v+ L++e GSBRNA2T00041455001 10 NKKKRLTQDQVRQLEKCFTLNNKLEPDLKLQLSNTLGLPQRQVAVWFQNKRARSKTQSLELQYRNLQSKLEAVLSDKAKLEHKVQFLQDE 99 59**************************************************************************************** PP HD-ZIP_I/II 91 lke 93 lk+ GSBRNA2T00041455001 100 LKR 102 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.4E-17 | 4 | 70 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.24E-17 | 4 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.844 | 6 | 66 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-16 | 8 | 70 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.6E-15 | 9 | 64 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.09E-13 | 9 | 67 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 41 | 64 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MENPQGQSRN KKKRLTQDQV RQLEKCFTLN NKLEPDLKLQ LSNTLGLPQR QVAVWFQNKR 60 ARSKTQSLEL QYRNLQSKLE AVLSDKAKLE HKVQFLQDEL KRSRNQLALF THQDSPVDNS 120 NLGSCEEGHD DQVVVFDELY DCFVTSGHGS SSNSWM* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00041455001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013714819.1 | 1e-111 | homeobox-leucine zipper protein ATHB-52-like | ||||
Swissprot | Q9FN29 | 1e-93 | ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52 | ||||
TrEMBL | A0A078GVX3 | 1e-110 | A0A078GVX3_BRANA; BnaA02g09950D protein | ||||
STRING | Bra022687.1-P | 7e-98 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12107 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 5e-96 | homeobox protein 52 |
Publications ? help Back to Top | |||
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