PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00041360001
Common NameGSBRNA2T00041360001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 323aa    MW: 36599.9 Da    PI: 6.7566
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00041360001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.47.8e-191461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEde+l++ ++++G g+W++ ++  g++R++k+c++rw +yl
  GSBRNA2T00041360001 14 KGPWTPEEDEKLINHIRKHGHGSWRALPKQAGLNRCGKSCRLRWTNYL 61
                         79********************************************97 PP

2Myb_DNA-binding51.91.8e-1667111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++ +eE++ +++++ +lG++ W++Ia +++ gRt++++k++w+++
  GSBRNA2T00041360001  67 RGNFAAEEEQTIINLHSLLGNK-WSSIAGHLP-GRTDNEIKNYWNTH 111
                          89999*****************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-27563IPR009057Homeodomain-like
PROSITE profilePS5129418.892961IPR017930Myb domain
SuperFamilySSF466896.36E-3211108IPR009057Homeodomain-like
SMARTSM007175.6E-161363IPR001005SANT/Myb domain
PfamPF002491.6E-171461IPR001005SANT/Myb domain
CDDcd001671.95E-121661No hitNo description
PROSITE profilePS5129426.10962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2664117IPR009057Homeodomain-like
SMARTSM007171.5E-1466114IPR001005SANT/Myb domain
PfamPF002499.5E-1567111IPR001005SANT/Myb domain
CDDcd001673.66E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGRSPCCDES GLKKGPWTPE EDEKLINHIR KHGHGSWRAL PKQAGLNRCG KSCRLRWTNY  60
LRPDIKRGNF AAEEEQTIIN LHSLLGNKWS SIAGHLPGRT DNEIKNYWNT HIRKKLIQMG  120
IDPVTHRPRT DHLNVLAALP QLLAAASFNN LLTLNQNIQP DATSVAKAQW LHSMMQVLNS  180
NNTSSSVDIH HTNYNIFGQS SFLENRPNIS ENLYDPTQSI SRIDHQPLDS FSSPLGVFSH  240
QDNEDMIPPL ISASSDGSKQ TQMMIKNKEI LKHNEHTSNP SSTLTFTQDH QPWCDIIDDE  300
ASDSYWKDLI EQTCSEPWPF HE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
1h8a_C2e-281211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00327DAPTransfer from AT3G02940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00041360001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584940.10.0PREDICTED: myb-related protein 330-like
SwissprotQ9S9Z26e-91MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A078GUF10.0A0A078GUF1_BRANA; BnaCnng06080D protein
STRINGBo5g150350.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.10.0myb domain protein 107
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]