PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00041323001

Common Name

GSBRNA2T00041323001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 539aa MW: 58188.4 Da PI: 8.5241

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00041323001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95	5.4e-30	215	274	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+++v+r+ +d +++++tYeg+Hnh+ GSBRNA2T00041323001 215 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRRQVQRCVDDMSILITTYEGTHNHP 274 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.8E-31	201	276	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-27	208	276	IPR003657	WRKY domain
PROSITE profile	PS50811	28.851	210	276	IPR003657	WRKY domain
SMART	SM00774	7.6E-37	215	275	IPR003657	WRKY domain
Pfam	PF03106	1.7E-26	216	274	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence Send to blast
MEVLKKLPTS DSIVKDEVAG SDGGIQESRK VSHELESANV EMREMKEENE KLKVMLEHIE 60 SDYKSLRLIY LNKVQQKSSA KPVPDNKNDH LNAEFVSSSD QEREFVSLSL GKRSSNSPSN 120 SIANKEEKTK LICLGAKEEE ELTNAGLTLG PAVGLAKENR AISSLEYSSS EEAPAMNKVT 180 GKRSSPSGGA DDNSQQNLAK RARVCVRARC DTLTMNDGCQ WRKYGQKVAK GNPCPRAYYR 240 CTVAPGCPVR RQVQRCVDDM SILITTYEGT HNHPLPLTAT AMASTTAAAA SMLLSGSSTS 300 GLDTEMIKNG MNFKLYDNNS RLINKPTVLS PLHPTVTLDL TIPMPKPSSS PYSLNFNTFS 360 SLQRFPSTSL NFSASSSSSD STSTINIPTI WGSGYASCSP VTDNKVHTGR PSFLNIGKNL 420 PQNPSLTETL TKALTSDPSF HSVIAQAIST MVGSGNGDQQ SARTLNSLSI TKQQAAADSN 480 NKNKGCEGYF SSLLMSNMAN PGMLSTLNLP SSELPFTLFT TSSSSSKPSF SNEEKKRL*

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence Send to blast

MEVLKKLPTS DSIVKDEVAG SDGGIQESRK VSHELESANV EMREMKEENE KLKVMLEHIE  60
SDYKSLRLIY LNKVQQKSSA KPVPDNKNDH LNAEFVSSSD QEREFVSLSL GKRSSNSPSN  120
SIANKEEKTK LICLGAKEEE ELTNAGLTLG PAVGLAKENR AISSLEYSSS EEAPAMNKVT  180
GKRSSPSGGA DDNSQQNLAK RARVCVRARC DTLTMNDGCQ WRKYGQKVAK GNPCPRAYYR  240
CTVAPGCPVR RQVQRCVDDM SILITTYEGT HNHPLPLTAT AMASTTAAAA SMLLSGSSTS  300
GLDTEMIKNG MNFKLYDNNS RLINKPTVLS PLHPTVTLDL TIPMPKPSSS PYSLNFNTFS  360
SLQRFPSTSL NFSASSSSSD STSTINIPTI WGSGYASCSP VTDNKVHTGR PSFLNIGKNL  420
PQNPSLTETL TKALTSDPSF HSVIAQAIST MVGSGNGDQQ SARTLNSLSI TKQQAAADSN  480
NKNKGCEGYF SSLLMSNMAN PGMLSTLNLP SSELPFTLFT TSSSSSKPSF SNEEKKRL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-21	202	276	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00041323001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009125039.1	0.0	PREDICTED: probable WRKY transcription factor 72
Swissprot	Q9LXG8	1e-166	WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBL	A0A078GUB2	0.0	A0A078GUB2_BRANA; BnaCnng05780D protein
STRING	Bra040505.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2959	28	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	1e-139	WRKY DNA-binding protein 72

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]