PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00041276001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GRAS | ||||||||
Protein Properties | Length: 247aa MW: 27233.2 Da PI: 9.4789 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 224.5 | 5e-69 | 1 | 241 | 120 | 374 |
GRAS 120 sqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlq 209 +qGlQWp L++ LasRp++ s+RiTg+g+ s++ l +tg+rLa+fA++l +pfef+++v k + ++++L +pgEa++V+++ GSBRNA2T00041276001 1 MQGLQWPGLFHILASRPRKLRSIRITGFGP----SSDVLASTGRRLADFAASLSLPFEFRPIVGKIGNVTDPSRLGRRPGEAVVVHWMQ- 85 69****************************....9**************************988888888******************9. PP GRAS 210 lhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 hrl+d +++ + L++v++l+P+++++veqe++++++ Fl rf+eal+yysalfd+l +l++es er +vE+ +l+ ei+n GSBRNA2T00041276001 86 -HRLYDVTGNGID----ALEIVRRLRPNLITMVEQELSYDDGgggCFLGRFVEALHYYSALFDALGDGLGEESGERFTVEQIVLATEIRN 170 .****98888888....*******************9885443449******************************************** PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +v + + +++W+e l+++GF+pv+l+ + a+qa lll + +++gy++ ee+g+l lgWkd +L+++SaW+ GSBRNA2T00041276001 171 IVGGKRR-------GVMRWKEELSRVGFRPVSLRGNPATQAGLLLGMLPWNGYTLVEENGTLRLGWKDLSLLTASAWQ 241 **87665.......4899***********************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 32.113 | 1 | 221 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-66 | 1 | 241 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MQGLQWPGLF HILASRPRKL RSIRITGFGP SSDVLASTGR RLADFAASLS LPFEFRPIVG 60 KIGNVTDPSR LGRRPGEAVV VHWMQHRLYD VTGNGIDALE IVRRLRPNLI TMVEQELSYD 120 DGGGGCFLGR FVEALHYYSA LFDALGDGLG EESGERFTVE QIVLATEIRN IVGGKRRGVM 180 RWKEELSRVG FRPVSLRGNP ATQAGLLLGM LPWNGYTLVE ENGTLRLGWK DLSLLTASAW 240 QSQPSD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 3e-95 | 1 | 240 | 137 | 377 | Protein SCARECROW |
5b3h_D | 3e-95 | 1 | 240 | 137 | 377 | Protein SCARECROW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, cotyledons, shoot apex, leaves and flowers. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00041276001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353382 | 0.0 | AK353382.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-35-L03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013632002.1 | 1e-179 | PREDICTED: scarecrow-like protein 23 | ||||
Swissprot | Q9FHZ1 | 1e-152 | SCL23_ARATH; Scarecrow-like protein 23 | ||||
TrEMBL | A0A0D3C0M6 | 1e-178 | A0A0D3C0M6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6C106 | 1e-178 | A0A3P6C106_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g143710.1 | 1e-179 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12512 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41920.1 | 1e-155 | GRAS family protein |
Publications ? help Back to Top | |||
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