PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00041155001

Common Name

GSBRNA2T00041155001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

BES1

Protein Properties

Length: 286aa MW: 30689.2 Da PI: 9.6327

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00041155001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	212.3	1.2e-65	15	153	1	146
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasasp 90 g++gr+ptwkErEnnk+RERrRRaiaaki++GLR+qGny+lpk++DnneVlkALc eAGw+v++DGttyrkgs+p+ + ++s GSBRNA2T00041155001 15 GATGRMPTWKERENNKKRERRRRAIAAKIFTGLRSQGNYNLPKHCDNNEVLKALCVEAGWIVHEDGTTYRKGSRPT-----ETTPPRVSA 99 589***********************************************************************.....678899* PP DUF822 91 esslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslv 146 +ss+q+s++ssa++spv+sy+asp+sss+psp+++d ++++ + l+p+l++l+++ GSBRNA2T00041155001 100 CSSIQLSPHSSAFQSPVPSYQASPASSSYPSPTRFDPNHSS--TYLIPYLQNLASS 153 ************************************887..99***999764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.8E-60	17	150	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005773	Cellular Component	vacuole

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MTASGGGSTA AGGAGATGRM PTWKERENNK KRERRRRAIA AKIFTGLRSQ GNYNLPKHCD 60 NNEVLKALCV EAGWIVHEDG TTYRKGSRPT ETTPPRVSAC SSIQLSPHSS AFQSPVPSYQ 120 ASPASSSYPS PTRFDPNHSS TYLIPYLQNL ASSGNLAPLR ISNSAPVTPP VSSPRGSHPR 180 LPKPQFSNFP VSAPSSPTRR LHHHYTSIPE CDESDVSTVD SCRWTRFQPV TVSQTCPPSP 240 TFNLVKNSVC VGGGDVSVKP WEGEKIHDVG VDDLELTLGN AKGRG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	2e-26	19	102	372	452	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	2e-26	19	102	372	452	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	2e-26	19	102	372	452	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	2e-26	19	102	372	452	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00041155001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189189	0.0	AC189189.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002E24, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009136556.1	0.0	PREDICTED: BES1/BZR1 homolog protein 1
Swissprot	Q9S7F3	1e-144	BEH1_ARATH; BES1/BZR1 homolog protein 1
TrEMBL	A0A078JA89	0.0	A0A078JA89_BRANA; BnaC07g50000D protein
STRING	Bra012891.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14467	17	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50750.1	1e-134	BES1/BZR1 homolog 1

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]