PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00040461001

Common Name

GSBRNA2T00040461001, LOC106364586

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 122aa MW: 13767 Da PI: 8.5827

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00040461001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.4	6.6e-40	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaC++lrr+C+kdCv++pyfp ++p+kfa+vh+++Ga nv+k+l++lp ++r +a++sl++eA +r++dPvyG+vg+i+ lq q++++ GSBRNA2T00040461001 5 RCAACRYLRRRCPKDCVFSPYFPPNNPEKFACVHRIYGAGNVSKMLQQLPVQTRAEAVESLCFEATCRIEDPVYGCVGMISLLQTQIQKT 94 6***************************************************************************************** PP DUF260 91 kaelallkee 100 ++ la++++e GSBRNA2T00040461001 95 ESLLARTQAE 104 *999999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.575	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-39	5	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MNPKRCAACR YLRRRCPKDC VFSPYFPPNN PEKFACVHRI YGAGNVSKML QQLPVQTRAE 60 AVESLCFEAT CRIEDPVYGC VGMISLLQTQ IQKTESLLAR TQAEITVAQI KHSQNQHSEF 120 M*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-36	6	105	12	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-36	6	105	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00040461001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013613397.1	6e-87	PREDICTED: LOB domain-containing protein 24-like
Refseq	XP_013659582.1	6e-87	LOB domain-containing protein 24
Swissprot	P59468	3e-74	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A078GTX3	1e-85	A0A078GTX3_BRANA; BnaC02g36230D protein
TrEMBL	A0A0D2ZPE8	1e-85	A0A0D2ZPE8_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6DFN9	1e-85	A0A3P6DFN9_BRAOL; Uncharacterized protein
STRING	Bo00285s360.1	2e-86	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	6e-65	LOB domain-containing protein 24

Link Out ? help Back to Top
Entrez Gene	106364586

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]