PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00040191001
Common NameGSBRNA2T00040191001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CPP
Protein Properties Length: 329aa    MW: 36631.5 Da    PI: 7.5147
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00040191001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.91.1e-142361241
                  TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41
                         ++kgC+C++skClk+YC+Cfa+g+ C++ C C  C+N+++
  GSBRNA2T00040191001 23 KQKGCRCRQSKCLKLYCDCFASGVLCND-CDCAACHNNTD 61
                         89**************************.********987 PP
2TCR49.67.9e-16105140439
                  TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          +gC+Ck++kClkkYCeCf+a++ Cs++CkC +C+N 
  GSBRNA2T00040191001 105 RGCKCKRTKCLKKYCECFQANALCSDNCKCINCENV 140
                          79*********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011145.7E-152262IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163428.6923142IPR005172CRC domain
PfamPF036381.7E-112459IPR005172CRC domain
SMARTSM011141.2E-15102143IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.4E-12105139IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MTSRTDGERE GNNTDQEGVT GRKQKGCRCR QSKCLKLYCD CFASGVLCND CDCAACHNNT  60
DNSFAREAAV LNLLDRNPNA FNGKPPSFLI NKQAATDTKL GLLSRGCKCK RTKCLKKYCE  120
CFQANALCSD NCKCINCENV SALGATNRHN VGFNTPDNLI CAPQSSLQQW NSCPAPLSSM  180
PDNYILDSLE SPMYSSPKLP YKKKRSRLGC NTPKLVPDLG DLRSLLLAAS ESATANAGLQ  240
DKNRICIKPD DKELWNESES GIVEEEDIQS CGRLIQLIDA QYNDEVDPQT KTRDIYMEQE  300
RAVLETFRDC LHKYMKVGFM KGTNYYHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-20201407121Protein lin-54 homolog
5fd3_B4e-20201407121Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00040191001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545887e-35AC254588.1 Capsella rubella clone CAP16-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013672428.10.0protein tesmin/TSO1-like CXC 8
SwissprotQ700D01e-126TCX8_ARATH; Protein tesmin/TSO1-like CXC 8
TrEMBLA0A078GTB90.0A0A078GTB9_BRANA; BnaC01g35470D protein
STRINGBo1g123680.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148441520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16160.11e-107Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]