PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00040175001
Common NameGSBRNA2T00040175001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 381aa    MW: 43478.8 Da    PI: 10.0877
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00040175001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox36.11.1e-11138185956
                          HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          + q+++Le+ Fe  +++  e++ +L k lgL+ rq+ + FqNr+a+ k
  GSBRNA2T00040175001 138 TGQVRALEKIFELGNKLEPERKMQLGKALGLQPRQIANCFQNRKARLK 185
                          569*******************************************98 PP
2HD-ZIP_I/II97.81.1e-31139219989
          HD-ZIP_I/II   9 eqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           qv++LE+ Fe  +kLeperK++l ++Lglqprq+a  Fqnr+AR ktkqlE+dy++Lk+++d lk++n++L  ++++L++
  GSBRNA2T00040175001 139 GQVRALEKIFELGNKLEPERKMQLGKALGLQPRQIANCFQNRKARLKTKQLERDYDTLKKQFDVLKSDNHSLLGHNKKLHD 219
                          6*****************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.130.10.102.3E-1365123IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.1E-970108IPR001680WD40 repeat
SuperFamilySSF509782.38E-1271123IPR017986WD40-repeat-containing domain
PfamPF004002.0E-673107IPR001680WD40 repeat
PROSITE profilePS5008213.08277109IPR001680WD40 repeat
PROSITE profilePS5029412.1377117IPR017986WD40-repeat-containing domain
SuperFamilySSF466894.15E-12126189IPR009057Homeodomain-like
PROSITE profilePS5007111.143127187IPR001356Homeobox domain
SMARTSM003893.3E-7131191IPR001356Homeobox domain
PfamPF000465.1E-9138185IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.6E-13139194IPR009057Homeodomain-like
CDDcd000861.15E-8140188No hitNo description
PfamPF021831.1E-11187218IPR003106Leucine zipper, homeobox-associated
SuperFamilySSF560593.18E-11237379No hitNo description
Gene3DG3DSA:3.30.1490.201.7E-5313349IPR013815ATP-grasp fold, subdomain 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003824Molecular Functioncatalytic activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MAKKRSRTTC SPDFKLLSQM IFIIPKKLKA GNGVDLETAN GRRNFKNKKF SDPATVTKWK  60
DERMKAFYTE ETPFQVLHGH TGDVLDLAWS DSNLLLSASK DKTVRLWRVG CDECLHIFHH  120
NDYRGGGNYM INRSMTFTGQ VRALEKIFEL GNKLEPERKM QLGKALGLQP RQIANCFQNR  180
KARLKTKQLE RDYDTLKKQF DVLKSDNHSL LGHNKKLHDG FHRCQSSNLG VVGTDGAARN  240
IFFVGSIAFQ DVAHKVSALK DFLNRGDMAR LKEIQEAFLQ MSAPKALRNE LIHKLRSERM  300
LYHGDESSWN RSWMAIKKLW ASKWNVRAYV SRKLELTHDA VCMSVLVQES CGDYAFVIHT  360
NNPVTGDPSE IHTRDCEGFG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00040175001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325761e-135AC232576.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS010I13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A078GUP90.0A0A078GUP9_BRANA; BnaC01g35380D protein
STRINGBo3g087040.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.12e-43homeobox 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]