PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00040053001
Common NameGSBRNA2T00040053001, LOC106358976
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 252aa    MW: 29042.4 Da    PI: 10.0668
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00040053001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69.2e-161964147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         rg W + Ed+ l ++v+q+G+++W+ Ia+++  gR++k+c++rw++ 
  GSBRNA2T00040053001 19 RGHWRPIEDDHLRQLVEQYGPKNWNFIAQHLY-GRSGKSCRLRWYNQ 64
                         899****************************9.************96 PP
2Myb_DNA-binding53.65.3e-1771114146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          ++++T+eE+e+l++a++  G++ W++Iar ++ gRt++ +k++++ 
  GSBRNA2T00040053001  71 KKPFTEEEEERLLQAHRFQGNR-WASIARLFP-GRTDNAVKNHFHV 114
                          689*******************.*********.**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3641465IPR017930Myb domain
SMARTSM007176.0E-131867IPR001005SANT/Myb domain
SuperFamilySSF466891.16E-2818112IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-252072IPR009057Homeodomain-like
PfamPF139211.7E-162282No hitNo description
CDDcd001676.44E-122263No hitNo description
PROSITE profilePS5129422.05266120IPR017930Myb domain
SMARTSM007175.6E-1470118IPR001005SANT/Myb domain
CDDcd001672.16E-1073113No hitNo description
Gene3DG3DSA:1.10.10.609.8E-2073118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEMSRGSNSF DNKQISCQRG HWRPIEDDHL RQLVEQYGPK NWNFIAQHLY GRSGKSCRLR  60
WYNQLDPNIT KKPFTEEEEE RLLQAHRFQG NRWASIARLF PGRTDNAVKN HFHVIMARRK  120
RESSSSTATS TFNQSWHNIL SHSSSLTRLD RSQFGLWTYQ KDKSRGLWPY TFVPAPKDGQ  180
FGSSSISSLH KDIYPERIKS KELVDHHNYE FQAATPDHKK NSISEDGPSM GDNGGKKNVT  240
FIDFLGVGLL S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-34191194104MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-331911958158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-331911958158MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-34191194104C-Myb DNA-Binding Domain
1msf_C2e-34191194104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00040053001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013654203.10.0transcriptional activator Myb
TrEMBLA0A078GT240.0A0A078GT24_BRANA; BnaC03g66570D protein
TrEMBLA0A3P6BMS70.0A0A3P6BMS7_BRAOL; Uncharacterized protein
STRINGBra034565.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101332036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.11e-157myb domain protein 69
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]